Mercurial > repos > lain > history_metadata_extractor
changeset 0:426b0f85a311 draft
" master branch Updating"
| author | lain |
|---|---|
| date | Tue, 19 Jul 2022 07:36:57 +0000 |
| parents | |
| children | c7f4f2ac38f2 |
| files | Dockerfile LICENSE Makefile README.md history_metadata_extractor.py history_metadata_extractor.xml manual_test.sh planemo_test.sh static/app.css static/app.js static/app.template.html static/header_list.template.html static/table.template.html static/title.template.html test-data/datasets_attrs.txt test-data/jobs_attrs.txt test-data/out.html vendor/bootstrap.min.css |
| diffstat | 18 files changed, 17684 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Dockerfile Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,55 @@ + +FROM python:3.8-buster + +# set author +MAINTAINER Lain Pavot <lain.pavot@inrae.fr> + +# set encoding +ENV LC_ALL en_US.UTF-8 +ENV LANG en_US.UTF-8 +ENV R_BASE_VERSION 4.0.3 + +ENV PLANEMO_VENV_LOCATION /planemo-venv +ENV CONDA /tmp/conda + +RUN \ + apt-get update \ + && apt-get install -y --no-install-recommends \ + ed \ + less \ + locales \ + vim-tiny \ + wget \ + ca-certificates \ + fonts-texgyre \ + && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \ + && locale-gen en_US.utf8 \ + && /usr/sbin/update-locale LANG=en_US.UTF-8 \ + && echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \ + && echo 'APT::Default-Release "buster";' > /etc/apt/apt.conf.d/default \ + && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \ + && apt-get update \ + && apt-get upgrade -y \ + && apt-get install -y --no-install-recommends \ + git \ + littler \ + libhdf5-dev \ + r-cran-littler \ + r-base \ + r-base-dev \ + r-recommended \ + python-virtualenv \ + && pip install virtualenv \ + && python -m virtualenv "$PLANEMO_VENV_LOCATION" \ + && . "$PLANEMO_VENV_LOCATION"/bin/activate \ + && pip install --upgrade pip setuptools \ + && pip install planemo numpy \ + && planemo conda_init --conda_prefix "$CONDA" \ + && apt-get clean autoclean \ + && apt-get autoremove --yes \ + && rm -rf /var/lib/{apt,dpkg,cache,log}/ \ + && rm -rf /usr/bin/X11 \ + && rm -rf /tmp/* ; + +CMD [] +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/LICENSE Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,550 @@ + + CONTRAT DE LICENCE DE LOGICIEL LIBRE CeCILL + +Version 2.1 du 2013-06-21 + + + Avertissement + +Ce contrat est une licence de logiciel libre issue d'une concertation +entre ses auteurs afin que le respect de deux grands principes préside à +sa rédaction: + + * d'une part, le respect des principes de diffusion des logiciels + libres: accès au code source, droits étendus conférés aux utilisateurs, + * d'autre part, la désignation d'un droit applicable, le droit + français, auquel elle est conforme, tant au regard du droit de la + responsabilité civile que du droit de la propriété intellectuelle et + de la protection qu'il offre aux auteurs et titulaires des droits + patrimoniaux sur un logiciel. + +Les auteurs de la licence CeCILL (Ce[a] C[nrs] I[nria] L[ogiciel] L[ibre]) +sont: + +Commissariat à l'énergie atomique et aux énergies alternatives - CEA, +établissement public de recherche à caractère scientifique, technique et +industriel, dont le siège est situé 25 rue Leblanc, immeuble Le Ponant +D, 75015 Paris. + +Centre National de la Recherche Scientifique - CNRS, établissement +public à caractère scientifique et technologique, dont le siège est +situé 3 rue Michel-Ange, 75794 Paris cedex 16. + +Institut National de Recherche en Informatique et en Automatique - +Inria, établissement public à caractère scientifique et technologique, +dont le siège est situé Domaine de Voluceau, Rocquencourt, BP 105, 78153 +Le Chesnay cedex. + + + Préambule + +Ce contrat est une licence de logiciel libre dont l'objectif est de +conférer aux utilisateurs la liberté de modification et de +redistribution du logiciel régi par cette licence dans le cadre d'un +modèle de diffusion en logiciel libre. + +L'exercice de ces libertés est assorti de certains devoirs à la charge +des utilisateurs afin de préserver ce statut au cours des +redistributions ultérieures. + +L'accessibilité au code source et les droits de copie, de modification +et de redistribution qui en découlent ont pour contrepartie de n'offrir +aux utilisateurs qu'une garantie limitée et de ne faire peser sur +l'auteur du logiciel, le titulaire des droits patrimoniaux et les +concédants successifs qu'une responsabilité restreinte. + +A cet égard l'attention de l'utilisateur est attirée sur les risques +associés au chargement, à l'utilisation, à la modification et/ou au +développement et à la reproduction du logiciel par l'utilisateur étant +donné sa spécificité de logiciel libre, qui peut le rendre complexe à +manipuler et qui le réserve donc à des développeurs ou des +professionnels avertis possédant des connaissances informatiques +approfondies. Les utilisateurs sont donc invités à charger et tester +l'adéquation du logiciel à leurs besoins dans des conditions permettant +d'assurer la sécurité de leurs systèmes et/ou de leurs données et, plus +généralement, à l'utiliser et l'exploiter dans les mêmes conditions de +sécurité. Ce contrat peut être reproduit et diffusé librement, sous +réserve de le conserver en l'état, sans ajout ni suppression de clauses. + +Ce contrat est susceptible de s'appliquer à tout logiciel dont le +titulaire des droits patrimoniaux décide de soumettre l'exploitation aux +dispositions qu'il contient. + +Une liste de questions fréquemment posées se trouve sur le site web +officiel de la famille des licences CeCILL +(http://www.cecill.info/index.fr.html) pour toute clarification qui +serait nécessaire. + + + Article 1 - DEFINITIONS + +Dans ce contrat, les termes suivants, lorsqu'ils seront écrits avec une +lettre capitale, auront la signification suivante: + +Contrat: désigne le présent contrat de licence, ses éventuelles versions +postérieures et annexes. + +Logiciel: désigne le logiciel sous sa forme de Code Objet et/ou de Code +Source et le cas échéant sa documentation, dans leur état au moment de +l'acceptation du Contrat par le Licencié. + +Logiciel Initial: désigne le Logiciel sous sa forme de Code Source et +éventuellement de Code Objet et le cas échéant sa documentation, dans +leur état au moment de leur première diffusion sous les termes du Contrat. + +Logiciel Modifié: désigne le Logiciel modifié par au moins une +Contribution. + +Code Source: désigne l'ensemble des instructions et des lignes de +programme du Logiciel et auquel l'accès est nécessaire en vue de +modifier le Logiciel. + +Code Objet: désigne les fichiers binaires issus de la compilation du +Code Source. + +Titulaire: désigne le ou les détenteurs des droits patrimoniaux d'auteur +sur le Logiciel Initial. + +Licencié: désigne le ou les utilisateurs du Logiciel ayant accepté le +Contrat. + +Contributeur: désigne le Licencié auteur d'au moins une Contribution. + +Concédant: désigne le Titulaire ou toute personne physique ou morale +distribuant le Logiciel sous le Contrat. + +Contribution: désigne l'ensemble des modifications, corrections, +traductions, adaptations et/ou nouvelles fonctionnalités intégrées dans +le Logiciel par tout Contributeur, ainsi que tout Module Interne. + +Module: désigne un ensemble de fichiers sources y compris leur +documentation qui permet de réaliser des fonctionnalités ou services +supplémentaires à ceux fournis par le Logiciel. + +Module Externe: désigne tout Module, non dérivé du Logiciel, tel que ce +Module et le Logiciel s'exécutent dans des espaces d'adressage +différents, l'un appelant l'autre au moment de leur exécution. + +Module Interne: désigne tout Module lié au Logiciel de telle sorte +qu'ils s'exécutent dans le même espace d'adressage. + +GNU GPL: désigne la GNU General Public License dans sa version 2 ou +toute version ultérieure, telle que publiée par Free Software Foundation +Inc. + +GNU Affero GPL: désigne la GNU Affero General Public License dans sa +version 3 ou toute version ultérieure, telle que publiée par Free +Software Foundation Inc. + +EUPL: désigne la Licence Publique de l'Union européenne dans sa version +1.1 ou toute version ultérieure, telle que publiée par la Commission +Européenne. + +Parties: désigne collectivement le Licencié et le Concédant. + +Ces termes s'entendent au singulier comme au pluriel. + + + Article 2 - OBJET + +Le Contrat a pour objet la concession par le Concédant au Licencié d'une +licence non exclusive, cessible et mondiale du Logiciel telle que +définie ci-après à l'article 5 <#etendue> pour toute la durée de +protection des droits portant sur ce Logiciel. + + + Article 3 - ACCEPTATION + +3.1 L'acceptation par le Licencié des termes du Contrat est réputée +acquise du fait du premier des faits suivants: + + * (i) le chargement du Logiciel par tout moyen notamment par + téléchargement à partir d'un serveur distant ou par chargement à + partir d'un support physique; + * (ii) le premier exercice par le Licencié de l'un quelconque des + droits concédés par le Contrat. + +3.2 Un exemplaire du Contrat, contenant notamment un avertissement +relatif aux spécificités du Logiciel, à la restriction de garantie et à +la limitation à un usage par des utilisateurs expérimentés a été mis à +disposition du Licencié préalablement à son acceptation telle que +définie à l'article 3.1 <#acceptation-acquise> ci dessus et le Licencié +reconnaît en avoir pris connaissance. + + + Article 4 - ENTREE EN VIGUEUR ET DUREE + + + 4.1 ENTREE EN VIGUEUR + +Le Contrat entre en vigueur à la date de son acceptation par le Licencié +telle que définie en 3.1 <#acceptation-acquise>. + + + 4.2 DUREE + +Le Contrat produira ses effets pendant toute la durée légale de +protection des droits patrimoniaux portant sur le Logiciel. + + + Article 5 - ETENDUE DES DROITS CONCEDES + +Le Concédant concède au Licencié, qui accepte, les droits suivants sur +le Logiciel pour toutes destinations et pour la durée du Contrat dans +les conditions ci-après détaillées. + +Par ailleurs, si le Concédant détient ou venait à détenir un ou +plusieurs brevets d'invention protégeant tout ou partie des +fonctionnalités du Logiciel ou de ses composants, il s'engage à ne pas +opposer les éventuels droits conférés par ces brevets aux Licenciés +successifs qui utiliseraient, exploiteraient ou modifieraient le +Logiciel. En cas de cession de ces brevets, le Concédant s'engage à +faire reprendre les obligations du présent alinéa aux cessionnaires. + + + 5.1 DROIT D'UTILISATION + +Le Licencié est autorisé à utiliser le Logiciel, sans restriction quant +aux domaines d'application, étant ci-après précisé que cela comporte: + + 1. + + la reproduction permanente ou provisoire du Logiciel en tout ou + partie par tout moyen et sous toute forme. + + 2. + + le chargement, l'affichage, l'exécution, ou le stockage du Logiciel + sur tout support. + + 3. + + la possibilité d'en observer, d'en étudier, ou d'en tester le + fonctionnement afin de déterminer les idées et principes qui sont à + la base de n'importe quel élément de ce Logiciel; et ceci, lorsque + le Licencié effectue toute opération de chargement, d'affichage, + d'exécution, de transmission ou de stockage du Logiciel qu'il est en + droit d'effectuer en vertu du Contrat. + + + 5.2 DROIT D'APPORTER DES CONTRIBUTIONS + +Le droit d'apporter des Contributions comporte le droit de traduire, +d'adapter, d'arranger ou d'apporter toute autre modification au Logiciel +et le droit de reproduire le logiciel en résultant. + +Le Licencié est autorisé à apporter toute Contribution au Logiciel sous +réserve de mentionner, de façon explicite, son nom en tant qu'auteur de +cette Contribution et la date de création de celle-ci. + + + 5.3 DROIT DE DISTRIBUTION + +Le droit de distribution comporte notamment le droit de diffuser, de +transmettre et de communiquer le Logiciel au public sur tout support et +par tout moyen ainsi que le droit de mettre sur le marché à titre +onéreux ou gratuit, un ou des exemplaires du Logiciel par tout procédé. + +Le Licencié est autorisé à distribuer des copies du Logiciel, modifié ou +non, à des tiers dans les conditions ci-après détaillées. + + + 5.3.1 DISTRIBUTION DU LOGICIEL SANS MODIFICATION + +Le Licencié est autorisé à distribuer des copies conformes du Logiciel, +sous forme de Code Source ou de Code Objet, à condition que cette +distribution respecte les dispositions du Contrat dans leur totalité et +soit accompagnée: + + 1. + + d'un exemplaire du Contrat, + + 2. + + d'un avertissement relatif à la restriction de garantie et de + responsabilité du Concédant telle que prévue aux articles 8 + <#responsabilite> et 9 <#garantie>, + +et que, dans le cas où seul le Code Objet du Logiciel est redistribué, +le Licencié permette un accès effectif au Code Source complet du +Logiciel pour une durée d'au moins 3 ans à compter de la distribution du +logiciel, étant entendu que le coût additionnel d'acquisition du Code +Source ne devra pas excéder le simple coût de transfert des données. + + + 5.3.2 DISTRIBUTION DU LOGICIEL MODIFIE + +Lorsque le Licencié apporte une Contribution au Logiciel, les conditions +de distribution du Logiciel Modifié en résultant sont alors soumises à +l'intégralité des dispositions du Contrat. + +Le Licencié est autorisé à distribuer le Logiciel Modifié, sous forme de +code source ou de code objet, à condition que cette distribution +respecte les dispositions du Contrat dans leur totalité et soit +accompagnée: + + 1. + + d'un exemplaire du Contrat, + + 2. + + d'un avertissement relatif à la restriction de garantie et de + responsabilité du Concédant telle que prévue aux articles 8 + <#responsabilite> et 9 <#garantie>, + +et, dans le cas où seul le code objet du Logiciel Modifié est redistribué, + + 3. + + d'une note précisant les conditions d'accès effectif au code source + complet du Logiciel Modifié, pendant une période d'au moins 3 ans à + compter de la distribution du Logiciel Modifié, étant entendu que le + coût additionnel d'acquisition du code source ne devra pas excéder + le simple coût de transfert des données. + + + 5.3.3 DISTRIBUTION DES MODULES EXTERNES + +Lorsque le Licencié a développé un Module Externe les conditions du +Contrat ne s'appliquent pas à ce Module Externe, qui peut être distribué +sous un contrat de licence différent. + + + 5.3.4 COMPATIBILITE AVEC D'AUTRES LICENCES + +Le Licencié peut inclure un code soumis aux dispositions d'une des +versions de la licence GNU GPL, GNU Affero GPL et/ou EUPL dans le +Logiciel modifié ou non et distribuer l'ensemble sous les conditions de +la même version de la licence GNU GPL, GNU Affero GPL et/ou EUPL. + +Le Licencié peut inclure le Logiciel modifié ou non dans un code soumis +aux dispositions d'une des versions de la licence GNU GPL, GNU Affero +GPL et/ou EUPL et distribuer l'ensemble sous les conditions de la même +version de la licence GNU GPL, GNU Affero GPL et/ou EUPL. + + + Article 6 - PROPRIETE INTELLECTUELLE + + + 6.1 SUR LE LOGICIEL INITIAL + +Le Titulaire est détenteur des droits patrimoniaux sur le Logiciel +Initial. Toute utilisation du Logiciel Initial est soumise au respect +des conditions dans lesquelles le Titulaire a choisi de diffuser son +oeuvre et nul autre n'a la faculté de modifier les conditions de +diffusion de ce Logiciel Initial. + +Le Titulaire s'engage à ce que le Logiciel Initial reste au moins régi +par le Contrat et ce, pour la durée visée à l'article 4.2 <#duree>. + + + 6.2 SUR LES CONTRIBUTIONS + +Le Licencié qui a développé une Contribution est titulaire sur celle-ci +des droits de propriété intellectuelle dans les conditions définies par +la législation applicable. + + + 6.3 SUR LES MODULES EXTERNES + +Le Licencié qui a développé un Module Externe est titulaire sur celui-ci +des droits de propriété intellectuelle dans les conditions définies par +la législation applicable et reste libre du choix du contrat régissant +sa diffusion. + + + 6.4 DISPOSITIONS COMMUNES + +Le Licencié s'engage expressément: + + 1. + + à ne pas supprimer ou modifier de quelque manière que ce soit les + mentions de propriété intellectuelle apposées sur le Logiciel; + + 2. + + à reproduire à l'identique lesdites mentions de propriété + intellectuelle sur les copies du Logiciel modifié ou non. + +Le Licencié s'engage à ne pas porter atteinte, directement ou +indirectement, aux droits de propriété intellectuelle du Titulaire et/ou +des Contributeurs sur le Logiciel et à prendre, le cas échéant, à +l'égard de son personnel toutes les mesures nécessaires pour assurer le +respect des dits droits de propriété intellectuelle du Titulaire et/ou +des Contributeurs. + + + Article 7 - SERVICES ASSOCIES + +7.1 Le Contrat n'oblige en aucun cas le Concédant à la réalisation de +prestations d'assistance technique ou de maintenance du Logiciel. + +Cependant le Concédant reste libre de proposer ce type de services. Les +termes et conditions d'une telle assistance technique et/ou d'une telle +maintenance seront alors déterminés dans un acte séparé. Ces actes de +maintenance et/ou assistance technique n'engageront que la seule +responsabilité du Concédant qui les propose. + +7.2 De même, tout Concédant est libre de proposer, sous sa seule +responsabilité, à ses licenciés une garantie, qui n'engagera que lui, +lors de la redistribution du Logiciel et/ou du Logiciel Modifié et ce, +dans les conditions qu'il souhaite. Cette garantie et les modalités +financières de son application feront l'objet d'un acte séparé entre le +Concédant et le Licencié. + + + Article 8 - RESPONSABILITE + +8.1 Sous réserve des dispositions de l'article 8.2 +<#limite-responsabilite>, le Licencié a la faculté, sous réserve de +prouver la faute du Concédant concerné, de solliciter la réparation du +préjudice direct qu'il subirait du fait du Logiciel et dont il apportera +la preuve. + +8.2 La responsabilité du Concédant est limitée aux engagements pris en +application du Contrat et ne saurait être engagée en raison notamment: +(i) des dommages dus à l'inexécution, totale ou partielle, de ses +obligations par le Licencié, (ii) des dommages directs ou indirects +découlant de l'utilisation ou des performances du Logiciel subis par le +Licencié et (iii) plus généralement d'un quelconque dommage indirect. En +particulier, les Parties conviennent expressément que tout préjudice +financier ou commercial (par exemple perte de données, perte de +bénéfices, perte d'exploitation, perte de clientèle ou de commandes, +manque à gagner, trouble commercial quelconque) ou toute action dirigée +contre le Licencié par un tiers, constitue un dommage indirect et +n'ouvre pas droit à réparation par le Concédant. + + + Article 9 - GARANTIE + +9.1 Le Licencié reconnaît que l'état actuel des connaissances +scientifiques et techniques au moment de la mise en circulation du +Logiciel ne permet pas d'en tester et d'en vérifier toutes les +utilisations ni de détecter l'existence d'éventuels défauts. L'attention +du Licencié a été attirée sur ce point sur les risques associés au +chargement, à l'utilisation, la modification et/ou au développement et à +la reproduction du Logiciel qui sont réservés à des utilisateurs avertis. + +Il relève de la responsabilité du Licencié de contrôler, par tous +moyens, l'adéquation du produit à ses besoins, son bon fonctionnement et +de s'assurer qu'il ne causera pas de dommages aux personnes et aux biens. + +9.2 Le Concédant déclare de bonne foi être en droit de concéder +l'ensemble des droits attachés au Logiciel (comprenant notamment les +droits visés à l'article 5 <#etendue>). + +9.3 Le Licencié reconnaît que le Logiciel est fourni "en l'état" par le +Concédant sans autre garantie, expresse ou tacite, que celle prévue à +l'article 9.2 <#bonne-foi> et notamment sans aucune garantie sur sa +valeur commerciale, son caractère sécurisé, innovant ou pertinent. + +En particulier, le Concédant ne garantit pas que le Logiciel est exempt +d'erreur, qu'il fonctionnera sans interruption, qu'il sera compatible +avec l'équipement du Licencié et sa configuration logicielle ni qu'il +remplira les besoins du Licencié. + +9.4 Le Concédant ne garantit pas, de manière expresse ou tacite, que le +Logiciel ne porte pas atteinte à un quelconque droit de propriété +intellectuelle d'un tiers portant sur un brevet, un logiciel ou sur tout +autre droit de propriété. Ainsi, le Concédant exclut toute garantie au +profit du Licencié contre les actions en contrefaçon qui pourraient être +diligentées au titre de l'utilisation, de la modification, et de la +redistribution du Logiciel. Néanmoins, si de telles actions sont +exercées contre le Licencié, le Concédant lui apportera son expertise +technique et juridique pour sa défense. Cette expertise technique et +juridique est déterminée au cas par cas entre le Concédant concerné et +le Licencié dans le cadre d'un protocole d'accord. Le Concédant dégage +toute responsabilité quant à l'utilisation de la dénomination du +Logiciel par le Licencié. Aucune garantie n'est apportée quant à +l'existence de droits antérieurs sur le nom du Logiciel et sur +l'existence d'une marque. + + + Article 10 - RESILIATION + +10.1 En cas de manquement par le Licencié aux obligations mises à sa +charge par le Contrat, le Concédant pourra résilier de plein droit le +Contrat trente (30) jours après notification adressée au Licencié et +restée sans effet. + +10.2 Le Licencié dont le Contrat est résilié n'est plus autorisé à +utiliser, modifier ou distribuer le Logiciel. Cependant, toutes les +licences qu'il aura concédées antérieurement à la résiliation du Contrat +resteront valides sous réserve qu'elles aient été effectuées en +conformité avec le Contrat. + + + Article 11 - DISPOSITIONS DIVERSES + + + 11.1 CAUSE EXTERIEURE + +Aucune des Parties ne sera responsable d'un retard ou d'une défaillance +d'exécution du Contrat qui serait dû à un cas de force majeure, un cas +fortuit ou une cause extérieure, telle que, notamment, le mauvais +fonctionnement ou les interruptions du réseau électrique ou de +télécommunication, la paralysie du réseau liée à une attaque +informatique, l'intervention des autorités gouvernementales, les +catastrophes naturelles, les dégâts des eaux, les tremblements de terre, +le feu, les explosions, les grèves et les conflits sociaux, l'état de +guerre... + +11.2 Le fait, par l'une ou l'autre des Parties, d'omettre en une ou +plusieurs occasions de se prévaloir d'une ou plusieurs dispositions du +Contrat, ne pourra en aucun cas impliquer renonciation par la Partie +intéressée à s'en prévaloir ultérieurement. + +11.3 Le Contrat annule et remplace toute convention antérieure, écrite +ou orale, entre les Parties sur le même objet et constitue l'accord +entier entre les Parties sur cet objet. Aucune addition ou modification +aux termes du Contrat n'aura d'effet à l'égard des Parties à moins +d'être faite par écrit et signée par leurs représentants dûment habilités. + +11.4 Dans l'hypothèse où une ou plusieurs des dispositions du Contrat +s'avèrerait contraire à une loi ou à un texte applicable, existants ou +futurs, cette loi ou ce texte prévaudrait, et les Parties feraient les +amendements nécessaires pour se conformer à cette loi ou à ce texte. +Toutes les autres dispositions resteront en vigueur. De même, la +nullité, pour quelque raison que ce soit, d'une des dispositions du +Contrat ne saurait entraîner la nullité de l'ensemble du Contrat. + + + 11.5 LANGUE + +Le Contrat est rédigé en langue française et en langue anglaise, ces +deux versions faisant également foi. + + + Article 12 - NOUVELLES VERSIONS DU CONTRAT + +12.1 Toute personne est autorisée à copier et distribuer des copies de +ce Contrat. + +12.2 Afin d'en préserver la cohérence, le texte du Contrat est protégé +et ne peut être modifié que par les auteurs de la licence, lesquels se +réservent le droit de publier périodiquement des mises à jour ou de +nouvelles versions du Contrat, qui posséderont chacune un numéro +distinct. Ces versions ultérieures seront susceptibles de prendre en +compte de nouvelles problématiques rencontrées par les logiciels libres. + +12.3 Tout Logiciel diffusé sous une version donnée du Contrat ne pourra +faire l'objet d'une diffusion ultérieure que sous la même version du +Contrat ou une version postérieure, sous réserve des dispositions de +l'article 5.3.4 <#compatibilite>. + + + Article 13 - LOI APPLICABLE ET COMPETENCE TERRITORIALE + +13.1 Le Contrat est régi par la loi française. Les Parties conviennent +de tenter de régler à l'amiable les différends ou litiges qui +viendraient à se produire par suite ou à l'occasion du Contrat. + +13.2 A défaut d'accord amiable dans un délai de deux (2) mois à compter +de leur survenance et sauf situation relevant d'une procédure d'urgence, +les différends ou litiges seront portés par la Partie la plus diligente +devant les Tribunaux compétents de Paris. + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Makefile Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,14 @@ + + +## **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr +## **@DATE**: 22/06/2022 + + +test: + python3 ./history_metadata_extractor.py \ + -d ./test-data/datasets_attrs.txt \ + -j ./test-data/jobs_attrs.txt \ + -o ./test-data/result.html \ + ; + firefox ./test-data/result.html +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,19 @@ + + + +History Metadata Extractor +=== + +Extracts informations from the `jobs_attrs.txt` file in exported histories, +and produces an html page showing these informations in a kawaii table. + + + +Metadata +=== + + * **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr + * **@CREATION DATE**: 22/06/2022 + * **@DATE**: 22/06/2022 + * **@VERSION**: 0.1.0 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/history_metadata_extractor.py Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,339 @@ +#!/usr/bin/env python + +## **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr +## **@DATE**: 22/06/2022 + + +import json +import os +import sys + + +with open(os.path.join(sys.path[0], "static", "app.css")) as css: + CSS_STYLES = css.read() + +with open(os.path.join(sys.path[0], "vendor", "bootstrap.min.css")) as bootstrap: + CSS_STYLES = f"{CSS_STYLES}\n{bootstrap.read()}" + +with open(os.path.join(sys.path[0], "static", "app.js")) as js: + JAVASCRIPT = js.read() + +with open(os.path.join(sys.path[0], "static", "app.template.html")) as template: + PAGE_TEMPLATE = template.read() + +with open(os.path.join(sys.path[0], "static", "title.template.html")) as template: + TITLE_TEMPLATE = template.read() + +with open(os.path.join(sys.path[0], "static", "table.template.html")) as template: + TABLE_TEMPLATE = template.read() + +with open(os.path.join(sys.path[0], "static", "header_list.template.html")) as template: + HEADER_LIST_TEMPLATE = template.read() + +HEADER_LIST_TEMPLATE = '\n'.join(( + "<thead>", + " <tr>", + "{header_list}", + " </tr>", + "</thead>", +)) + +HEADER_TEMPLATE = "<th scope=\"col\">{}</th>" +COLUMN_TEMPLATE = "<th scope=\"row\">{}</th>" + +TABLE_LINE_LIST_TEMPLATE = '\n'.join(( + "<tr class=\"{classes}\">", + "{table_lines}", + "</tr>", +)) +TABLE_LINE_TEMPLATE = "<td>{}</td>" + +INDENT = " " + + +HISTORY_CACHE = {} + +def indent(text): + if text.startswith("\n"): + return text.replace("\n", f"\n{INDENT}") + else: + return INDENT+text.replace("\n", f"\n{INDENT}") + +def noempty(ls, as_list=True): + if as_list: + return [x for x in ls if x] + return (x for x in ls if x) + +def join_noempty(ls, sep=';'): + return sep.join(noempty(ls, as_list=False)) + +def extract_dataset_attributes(dataset_attrs): + for dataset_attr in dataset_attrs: + HISTORY_CACHE[dataset_attr["encoded_id"]] = dataset_attr + HISTORY_CACHE["dataset_attrs"] = dataset_attrs + +def convert_to_html(jobs_attrs, dataset_attrs=None): + if dataset_attrs: + extract_dataset_attributes(dataset_attrs) + return PAGE_TEMPLATE.format( + styles=CSS_STYLES.replace("\n<", "\n <"), + javascript=JAVASCRIPT, + title=indent(indent(get_title(jobs_attrs))), + table_list=indent(indent(get_table_list(jobs_attrs))) + ) + +def get_title(jobs_attrs): + galaxy_version = jobs_attrs[0]["galaxy_version"] or "Unknown version" + return TITLE_TEMPLATE.format(galaxy_version=galaxy_version) + +def get_table_list(jobs_attrs): + return '\n'.join(( + convert_item_to_table(job_attr, dataset_id) + for job_attr in jobs_attrs + for dataset_id_set in sorted(list(( + job_attr["output_dataset_mapping"] + or {1:"unknown"} + ).values())) + for dataset_id in sorted(dataset_id_set) + )) + +def convert_item_to_table(job_attr, dataset_id): + encoded_jid = job_attr.get("encoded_id") + if HISTORY_CACHE: + history = HISTORY_CACHE.get(dataset_id, {}) + hid = history.get("hid", "DELETED") + else: + hid = "?" + exit_code = job_attr.get("exit_code") + if job_attr["exit_code"] == 0: + status = f"Ok ({exit_code})" + classes = "alert alert-success" + else: + status = f"Failed ({exit_code})" + classes = "alert alert-danger" + if hid == "DELETED": + classes += " history_metadata_extractor_deleted" + print(job_attr) + tool_name = job_attr["tool_id"] or "unknown" + if tool_name.count("/") >= 4: + tool_name = job_attr["tool_id"].split("/")[-2] + tool_name = tool_name + " - " + job_attr["tool_version"] + tool_name = f"[{hid}] - {tool_name}" + return TABLE_TEMPLATE.format( + classes=classes, + tool_name=tool_name, + tool_output="", + tool_status=status, + table=convert_parameters_to_html(job_attr) + ) + +def convert_parameters_to_html(job_attr): + params = job_attr["params"] + params_enrichment(job_attr, params) + keys = [ + key for key in iter_parameter_keys(params) + if key not in ("dbkey", "chromInfo", "__input_ext", "request_json") + ] + return '\n'.join(( + indent(get_table_header(params, ["value", "name", "extension", "hid"])), + indent(get_table_lines(params, keys)), + )) + +def params_enrichment(job_attr, params): + print(params) + if ( + all(map(params.__contains__, ("request_json", "files"))) + and "encoded_id" in job_attr + ): + params.update(json.loads(params.pop("request_json"))) + for i, target in enumerate(params.pop("targets")): + files = target["elements"] + params["files"][i]["hid"] = join_noempty( + str(file["object_id"]) + for file in files + ) + params["files"][i]["name"] = join_noempty( + str(file["name"]) + for file in files + ) + params["files"][i]["extension"] = join_noempty( + str(file["ext"]) + for file in files + ) + +def iter_parameter_keys(params): + for key in params: + param = params[key] + if param_is_file(param): + yield key + elif isinstance(param, dict): + for subkey in iter_parameter_keys(param): + if subkey not in ("__current_case__", ): + yield f"{key}.{subkey}" + else: + yield key + +def param_is_file(param): + return is_file_v1(param) or is_file_v2(param) + +def is_file_v1(param): + return ( + isinstance(param, dict) + and all(map( + param.__contains__, + ("info", "peek", "name", "extension") + )) + ) + +def is_file_v2(param): + return ( + isinstance(param, dict) + and "values" in param + and isinstance(param["values"], list) + and isinstance(param["values"][0], dict) + and all(map(param["values"][0].__contains__, ("id", "src"))) + ) + +def get_table_header(params, keys): + return HEADER_LIST_TEMPLATE.format( + header_list=indent(indent('\n'.join(map(HEADER_TEMPLATE.format, [""]+keys)))) + ) + +def get_table_lines(params, keys): + return ''.join(table_lines_iterator(params, keys)) + +def table_lines_iterator(params, param_names): + keys = ("value", "name", "extension", "hid",) + for param_name in param_names: + classes = "" + table_lines = [] + subparam = params + while '.' in param_name: + subkey, param_name = param_name.split('.', 1) + subparam = subparam[subkey] + for key in keys: + param = extract_param_info(key, subparam[param_name]) + table_lines.append(param) + yield TABLE_LINE_LIST_TEMPLATE.format( + classes=classes, + table_lines=( + indent(COLUMN_TEMPLATE.format(param_name) + '\n') + + indent('\n'.join(map( + TABLE_LINE_TEMPLATE.format, + table_lines + ))) + ) + ) + +def extract_param_info(key, param): + if key == "value": + return extract_param_value(param) + if isinstance(param, dict) and key in param: + return str(param[key]) + if isinstance(param, list): + return join_noempty(extract_param_info(key, p) for p in param) + return "" + +def extract_param_value(param): + if isinstance(param, dict): + if "__current_case__" in param: + return join_dict_key_values(param, ignore=("__current_case__", )) + for acceptable_value in ("file_data", "file_name"): + if acceptable_value in param: + return f"{acceptable_value}: {param[acceptable_value]}" + if "values" in param: + ids = [] + for file_id in param["values"]: + file_id = file_id["id"] + if file_id in HISTORY_CACHE: + file_info = HISTORY_CACHE[file_id] + param["name"] = file_info["name"] + param["hid"] = file_info["hid"] + param["extension"] = file_info["extension"] + ids.append(file_id) + return join_noempty(ids) + if isinstance(param, (str, int, float)): + return str(param) + if isinstance(param, (list, tuple)): + return join_noempty(map(extract_param_value, param)) + return str(param) + +def join_dict_key_values(dico, ignore=()): + return join_noempty( + f"{name}: {dico[name]}" + for name in dico + if name not in ignore + ) + +if __name__ == "__main__": + import optparse + parser = optparse.OptionParser() + parser.add_option( + "-j", "--jobs-attrs", + dest="jobs_attrs", + help="write report of FILE", + metavar="FILE", + default="jobs_attrs.txt" + ) + parser.add_option( + "-d", "--dataset-attrs", + dest="dataset_attrs", + help="extract additional info from this file", + metavar="FILE", + default=None, + ) + parser.add_option( + "-o", "--output", + dest="output", + help="write report to FILE", + metavar="FILE", + default="out.html" + ) + parser.add_option( + "-v", "--version", + action="store_true", + help="Show this script's version and exits", + ) + + (options, args) = parser.parse_args() + + if options.version: + + import re + + with open(os.path.join(sys.path[0], "README.md")) as readme: + for line in readme.readlines(): + if "**@VERSION**" in line: + print(re.search(r"\d+\.\d+\.\d+", line)[0]) + sys.exit(0) + + with open(options.jobs_attrs) as j: + jobs_attrs = json.load(j) + + if options.dataset_attrs is not None: + with open(options.dataset_attrs) as ds: + dataset_attrs = json.load(ds) + else: + dataset_attrs = {} + + jobs_attrs = [{ + key: jobs_attr.get(key) + for key in ( + "galaxy_version", + "tool_id", + "tool_version", + "encoded_id", + "params", + "output_datasets", + "exit_code", + "output_dataset_mapping", + ) + } for jobs_attr in jobs_attrs] + if jobs_attrs and jobs_attrs[0].get("output_datasets"): + jobs_attrs = sorted( + jobs_attrs, + key=lambda x:x["output_datasets"][0] + ) + + with open(options.output, "w") as o: + o.write(convert_to_html(jobs_attrs, dataset_attrs=dataset_attrs))
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/history_metadata_extractor.xml Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,96 @@ +<tool + id="history_metadata_extractor" + name="History Metadata Extractor" + version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" + profile="21.09" +> + <description> + displays information from exported history's jobs_attrs.txt file. + </description> + <macros> + <token name="@TOOL_VERSION@">1.0.0</token> + <token name="@VERSION_SUFFIX@">0</token> + </macros> + <requirements> + <requirement type="package" version="3.10.5">python</requirement> + </requirements> + <stdio> + <exit_code range="1" level="fatal" description="Missing parameter error" /> + <exit_code range="2" level="fatal" description="Bad parameter's value" /> + <exit_code range="3" level="fatal" description="Missing input file" /> + <exit_code range="4:254" level="fatal" description="Unknown error" /> + <exit_code range="255" level="fatal" description="No any result to output" /> + </stdio> + <version_command> + python3 '$__tool_directory__/history_metadata_extractor.py' --version | head -n 1 + </version_command> + <command> + <![CDATA[ +python3 '$__tool_directory__/history_metadata_extractor.py' + --jobs-attrs '$jobs_attrs' + --dataset-attrs '$dataset_attrs' + --output '$history_visu' + ]]> + </command> + <inputs> + <param + argument="--jobs-attrs" + type="data" + format="txt" + label="Exported history's jobs_attrs.txt file" + help="Export and extract an history. Select the file 'jobs_attrs.txt'" + /> + <param + argument="--dataset-attrs" + type="data" + format="txt" + label="Exported history's dataset_attrs.txt file" + help="Export and extract an history. Select the file 'dataset_attrs.txt'" + /> + </inputs> + <outputs> + <data + name="history_visu" + format="html" + label="history_visu.html" + /> + </outputs> + <tests> + <test> + <param name="jobs_attrs" value="jobs_attrs.txt" /> + <param name="dataset_attrs" value="datasets_attrs.txt" /> + <output name="history_visu" file="out.html" /> + </test> + </tests> + <help><![CDATA[ +.. class:: infomark + +**Authors** Lain Pavot + +.. class:: infomark + +--------------------------------------------------- + + + + +History Metadata Extractor + +Extracts informations from the `jobs_attrs.txt` file in exported histories, +and produces an html page showing these informations in a kawaii table. + + + +Metadata + + * **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr + * **@CREATION DATE**: 22/06/2022 + * **@DATE**: 22/06/2022 + * **@VERSION**: 0.1.0 + + + + +]]> + </help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/manual_test.sh Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,110 @@ +#!/bin/bash + + + +## **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr +## **@DATE**: 22/06/2022 + + +envs_directory=$(pwd) +envs_directory=/tmp/history_metadata_extractor-envs +mkdir -p ${envs_directory} + +VENV=${envs_directory}/.manual-venv +CENV=${envs_directory}/.manual-conda + +MAMBA_SOLVER= +## comment to deactivate mamba solver +MAMBA_SOLVER="--experimental-solver libmamba" + +ENV_NAME=history_metadata_extractor +XML_PATH=./history_metadata_extractor.xml +SCRIPT_NAME=history_metadata_extractor.py +output_name=out.html +options=" \ + -d ./test-data/datasets_attrs.txt \ + -j ./test-data/jobs_attrs.txt \ + -o ./${output_name} \ +" +expected_result=test-data/out.html +runner=python3.10 +dependencies=python=3.10.5 +miniconda_version=py37_4.12.0-Linux-x86_64 + + + +if [ ! -e "${VENV}" ];then + echo "virtualenv not created yet, creating..." + python3 -m virtualenv "${VENV}" + echo "venv created" +else + echo "virtualenv already exist: ok" +fi +. ${VENV}/bin/activate + +if [ ! -e "${CENV}" ];then + echo "conda env not created yet, creating..." + if [ ! -e ./install_conda.sh ];then + wget \ + -O install_conda.sh \ + https://repo.anaconda.com/miniconda/Miniconda3-${miniconda_version}.sh \ + ; + fi + bash ./install_conda.sh -b -p "${CENV}" + + ${CENV}/bin/conda install -y -n base conda-libmamba-solver + ${CENV}/bin/conda create \ + -y \ + --quiet \ + --override-channels \ + --channel conda-forge \ + --channel bioconda \ + --channel defaults \ + --name "${ENV_NAME}" \ + ${MAMBA_SOLVER} \ + ${dependencies} + echo "conda env created" +fi + +echo "" +echo "===== preparing =====" + +oldwd=$(pwd) +tmp=$(mktemp -d) +echo "Working in ${tmp}" +files=$(find . -maxdepth 1 -regex "./.+") +cd "${tmp}" +echo "creating links..." +echo "${files}" | xargs -I file ln -s "${oldwd}"/file file +echo "ready to work" + +echo "" +echo "===== processing =====" + +. "${CENV}/bin/activate" "${CENV}/envs/${ENV_NAME}" ; + +${runner} ./${SCRIPT_NAME} ${options}; + +echo "" +echo "Error code: ${?}" ; + +lines=$(diff "${output_name}" "${expected_result}" 2>&1) + +echo "" +echo "===== results =====" + +if [ "${lines}" = "" ];then + echo "Result equal to expected." +else + echo "Some lines are different:" + echo "${lines}" +fi + +echo "" +echo "===== cleaning =====" + +echo "Removing ${tmp}..." +rm -rf "${tmp}" + +echo "" +echo "Done."
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo_test.sh Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,37 @@ +#!/bin/sh + + +## **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr +## **@DATE**: 22/06/2022 + +VENV=.venv +TEST_DIR=/tmp/history_metadata_extractor + +if [ ! -d ".venv" ];then + python3 -m virtualenv ${VENV} ; +fi + + +. ${VENV}/bin/activate + +if [ "$(which planemo)" = "" ];then + pip install planemo ; +fi + + +if [ ! -d "${TEST_DIR}" ];then + planemo conda_install --conda_prefix ${TEST_DIR} . ; +fi + +planemo lint --fail_level error ./*.xml || exit 255 ; + +planemo test \ + --install_galaxy \ + --conda_dependency_resolution \ + --conda_prefix ${TEST_DIR} \ + --no_cleanup \ + --no_wait \ + --simultaneous_uploads \ + ${TEST_FLAGS} \ + history_metadata_extractor.xml \ +;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/app.css Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,11 @@ + +html, body { + height: 100% ; +} + +.history_metadata_extractor_h2.kawaii:before, +.history_metadata_extractor_h2.kawaii:after{content:'≧◡≦'} +.history_metadata_extractor_status.kawaii:after, +.history_metadata_extractor_status.kawaii:before{content: '(●´ω｀●)'} +.history_metadata_extractor_glitter.kawaii:before{content: '(ﾉ◕ヮ◕)ﾉ*:･ﾟ✧'} +#glitter-generator{cursor: pointer} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/app.js Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,57 @@ + +var content = document.getElementById("history_metadata_extractor_content") ; +document.getElementById("history_metadata_extractor_top").onclick = () => { + content.scrollTo(0, 0) ; +} ; +document.getElementById("history_metadata_extractor_bottom").onclick = () => { + content.scrollTo(0, content.scrollHeight) ; +} ; +var folded = false ; +document.getElementById("history_metadata_extractor_folder").onclick = (e) => { + if (folded) { + var func = (item) => item.classList.remove("d-none") ; + } else { + var func = (item) => item.classList.add("d-none") ; + } + Array.prototype.forEach.call(document.getElementsByClassName("history_metadata_extractor_table"), func) ; + folded = ! folded ; +} ; + +var kawaii = false ; +document.getElementById("glitter-generator").onclick = (e) => { + if (kawaii) { + var func = (item) => item.classList.remove("kawaii") ; + } else { + var func = (item) => item.classList.add("kawaii") ; + } + Array.prototype.forEach.call(document.querySelectorAll("[class^=history_metadata_extractor_]"), func) ; + kawaii = ! kawaii ; +} ; + +var show_deleted = true ; +document.getElementById("history_metadata_extractor_toggle_deleted").onclick = (e) => { + show_deleted = !show_deleted ; + if (show_deleted) { + var func = (item) => item.classList.remove("d-none") ; + } else { + var func = (item) => item.classList.add("d-none") ; + } + Array.prototype.forEach.call( + document.getElementsByClassName("history_metadata_extractor_deleted"), + func + ) ; +} ; + +Array.prototype.forEach.call(document.getElementsByClassName( + "history_metadata_extractor_h2"), + (h2) => { + var table = h2.nextSibling.nextSibling.nextSibling.nextSibling.nextSibling.nextSibling ; + h2.onclick = (e) => { + if (table.classList.contains("d-none")) { + table.classList.remove("d-none") ; + } else { + table.classList.add("d-none") ; + } + } + } +)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/app.template.html Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,59 @@ + +<!doctype HTML> +<html> +<style>{styles}</style> + <body + class="bg-secondary bg-gradient" + style="--bs-bg-opacity: .1; padding-top: 80px;" + > + <nav + class="navbar justify-content-center navbar-dark navbar-expand" + id="history_metadata_extractor_masthead" + style=" + background-color: #2c3143; + top:0px; + position:fixed; + width: 100%; + z-index: 999 ; + " + > + <a class="navbar-brand"> + <span class="navbar-brand-title">{title}</span> + </a> + + <button id="history_metadata_extractor_top" class="btn btn-outline-light d-block m-2"> + Top + </button> + <button id="history_metadata_extractor_folder" class="btn btn-outline-light d-block m-2"> + Fold/Unfold tables + </button> + <button id="history_metadata_extractor_toggle_deleted" class="btn btn-outline-light d-block m-2"> + Show/Hide deleted + </button> + <button id="history_metadata_extractor_bottom" class="btn btn-outline-light d-block m-2"> + Bottom + </button> + </nav> + <div + id="history_metadata_extractor_content" + class="container pt-2 bg-white" + style="overflow-y: auto ; height: 100%" + > + {table_list} + <footer class="d-block py-3"> + <div class="container text-center"> + <p> + Made with + <span id="glitter-generator" title="click for glitter and kawaii >‿<"> + ❤️ + </span> + by Lain (mail: lain pavot inrae fr) - feel free to contact me for improvement requests + </p> + </div> + </footer> + </div> + <script> + {javascript} + </script> + </body> +</html> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/header_list.template.html Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,5 @@ +<thead> + <tr> + {header_list} + </tr> +</thead>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/table.template.html Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,29 @@ + +<div class="{classes}"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + {tool_name} + </h2> + <p> + Outputs: {tool_output} + </p> + <p class="history_metadata_extractor_status"> + Status: {tool_status} + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + {table} + </table> +</div>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/title.template.html Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,1 @@ +<h1>Galaxy - {galaxy_version}</h1> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/datasets_attrs.txt Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,1 @@ +[{"annotation": null, "blurb": "2.2 MB", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-06-23 07:41:06.150944", "dataset_uuid": "a89e0ed3-253a-4336-bd0d-0bb88e2bbc87", "deleted": false, "designation": null, "encoded_id": "9e77b3d7d0887128", "extension": "rdata", "file_metadata": {}, "file_name": "datasets/test.rdata_1.rdata", "hid": 1, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "uploaded rdata file", "metadata": {"dbkey": "?", "version": "2"}, "model_class": "HistoryDatasetAssociation", "name": "test.rdata", "peek": "Compressed binary file", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 08:57:41.893692", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "82,885 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-06-23 14:20:21.414281", "dataset_uuid": "e56a7c62-e129-4c16-b5e3-f50eccbc4da3", "deleted": false, "designation": null, "encoded_id": "9a0ce47bd1734ae7", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/peaklist_fragments.tsv_42.tabular", "hid": 42, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "uploaded tabular file", "metadata": {"column_names": [], "column_types": ["int", "int", "int", "int", "int", "float", "float", "float", "float", "int", "int", "int", "int", "int"], "columns": 14, "comment_lines": 0, "data_lines": 82885, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragments.tsv", "peek": "grpid\tpid\tprecursorScanNum\tacquisitionNum\tfileid\tmz\ti\tsnr\tra\tpurity_pass_flag\tintensity_pass_flag\tra_pass_flag\tsnr_pass_flag\tpass_flag\n674\t6641\t217\t218\t3\t78.78297424\t2488.865234\t17.57342471\t55.280578\t1\t1\t1\t1\t1\n674\t6641\t217\t218\t3\t79.78527069\t45.78085709\t0.323250305\t1.016845832\t1\t1\t1\t0\t0\n674\t6641\t217\t218\t3\t80.87423706\t6.168063164\t0.043551572\t0.136999823\t1\t1\t1\t0\t0\n674\t6641\t217\t218\t3\t90.00985718\t229.644455\t1.621477725\t5.100669184\t1\t1\t1\t0\t0\n", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 09:50:50.774726", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "2,736 lines, 1 comments", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-06-23 14:20:21.855053", "dataset_uuid": "686f913c-c854-42ee-aec4-90c357320f8f", "deleted": false, "designation": null, "encoded_id": "eee378ebc66a66f1", "extension": "csv", "file_metadata": {}, "file_name": "datasets/peaklist_precursors.csv_43.csv", "hid": 43, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "uploaded csv file", "metadata": {"column_names": ["grpid", "mz", "mzmin", "mzmax", "rt", "rtmin", "rtmax", "into", "intb", "maxo", "sn", "sample", "cid", "filename", "rtminCorrected", "rtmaxCorrected", "inPurity", "pid", "precurMtchID", "precurMtchScan", "precurMtchRT", "precurMtchMZ", "precurMtchPPM", "retentionTime", "fileid", "seqNum", "purity_pass_flag"], "column_types": ["int", "float", "float", "float", "float", "float", "float", "float", "float", "int", "int", "int", "int", "str", "float", "float", "float", "int", "int", "int", "float", "float", "float", "float", "int", "int", "str"], "columns": 27, "comment_lines": 1, "data_lines": 2736, "dbkey": "?", "delimiter": ","}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_precursors.csv", "peek": "\"grpid\",\"mz\",\"mzmin\",\"mzmax\",\"rt\",\"rtmin\",\"rtmax\",\"into\",\"intb\",\"maxo\",\"sn\",\"sample\",\"cid\",\"filename\",\"rtminCorrected\",\"rtmaxCorrected\",\"inPurity\",\"pid\",\"precurMtchID\",\"precurMtchScan\",\"precurMtchRT\",\"precurMtchMZ\",\"precurMtchPPM\",\"retentionTime\",\"fileid\",\n\"674\",121.993879318102,121.993766784668,121.99397277832,69.4840944720271,63.56629999998,78.89839999998,3933750.80009461,3933736.08127861,395685,395684,3,16484,\"HBMSPE21_024.mzML\",62.750400858841,78.0434285273669,0.526099609140227,6641,218,217,64.8261,121.9\n\"674\",121.993879318102,121.993766784668,121.99397277832,69.4840944720271,63.56629999998,78.89839999998,3933750.80009461,3933736.08127861,395685,395684,3,16484,\"HBMSPE21_024.mzML\",62.750400858841,78.0434285273669,0.619848678681211,6642,220,219,65.4511000000\n\"674\",121.993879318102,121.993766784668,121.99397277832,69.4840944720271,63.56629999998,78.89839999998,3933750.80009461,3933736.08127861,395685,395684,3,16484,\"HBMSPE21_024.mzML\",62.750400858841,78.0434285273669,0.644526797604947,6643,222,221,66.0673000000\n\"674\",121.993879318102,121.993766784668,121.99397277832,69.4840944720271,63.56629999998,78.89839999998,3933750.80009461,3933736.08127861,395685,395684,3,16484,\"HBMSPE21_024.mzML\",62.750400858841,78.0434285273669,0.676966047514146,6644,224,223,66.6843,121.9\n", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-06-28 06:52:20.975613", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "33 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-06-23 14:20:22.215516", "dataset_uuid": "e0b52f01-264d-4882-830d-304592fdbd91", "deleted": false, "designation": null, "encoded_id": "7cf499d16bd542b2", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/compounds_pos.txt_44.tabular", "hid": 44, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "uploaded tabular file", "metadata": {"column_names": [], "column_types": ["str", "float", "float"], "columns": 3, "comment_lines": 0, "data_lines": 33, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "compounds_pos.txt", "peek": "Compounds\tmz\trt\n2-diethylamino-6-methyl pyrimidin-4-ol one\t182.12879\t345.0\n5-hydroxy-thiabendazole\t218.03826\t315.0\nacetamiprid-N-desmethyl\t209.05885\t526.2\nAcetochlor\t270.12554\t1158.6\n", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 08:58:06.876928", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "82,885 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:56:36.489801", "dataset_uuid": "f2a503b8-0fb7-4d44-aef1-fa3eba565220", "deleted": false, "designation": "outFull", "encoded_id": "1818c0744f54583c", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/peaklist_fragmen.BIH4BLOODEXPOSOME_Full.tabular_576.tabular", "hid": 576, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nloading /galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/auto/share/dist/Metabolomics-Fragment-Annotation/BloodExposome_v1_0.txt...\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPea", "metadata": {"column_names": [], "column_types": ["int", "int", "int", "int", "int", "float", "float", "float", "float", "int", "int", "int", "int", "int", "int", "int", "float", "str", "float", "float", "float", "float"], "columns": 22, "comment_lines": 0, "data_lines": 82885, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragmen.BIH4BLOODEXPOSOME_Full.tabular", "peek": "grpid\tpid\tprecursorScanNum\tacquisitionNum\tfileid\tmz\ti\tsnr\tra\tpurity_pass_flag\tintensity_pass_flag\tra_pass_flag\tsnr_pass_flag\tpass_flag\t_MESURED_MONOISOTOPIC_MASS_\t_PPM_ERROR_\t_COMPUTED_MONOISOTOPIC_MASS_\t_ANNOTATION_NAME_\t_ANNOTATION_TYPE_\t_ANNOTATION_IN_N\n674\t6641\t217\t218\t3\t78.78297424\t2488.865234\t17.57342471\t55.280578\t1\t1\t1\t1\t1\t674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t6641\t217\t218\t3\t79.78527069\t45.78085709\t0.323250305\t1.016845832\t1\t1\t1\t0\t0\t674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t6641\t217\t218\t3\t80.87423706\t6.168063164\t0.043551572\t0.136999823\t1\t1\t1\t0\t0\t674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t6641\t217\t218\t3\t90.00985718\t229.644455\t1.621477725\t5.100669184\t1\t1\t1\t0\t0\t674\t0\t0\tNA\tNA\tNA\tNA\tNA\n", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 10:20:15.946197", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "82,885 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:56:36.489807", "dataset_uuid": "e6331c2c-e08e-4730-abcd-637d6ff02c61", "deleted": false, "designation": "outputTab", "encoded_id": "59261f87693eaee6", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/peaklist_fragmen.BIH4BLOODEXPOSOME.tabular_577.tabular", "hid": 577, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nloading /galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/auto/share/dist/Metabolomics-Fragment-Annotation/BloodExposome_v1_0.txt...\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPea", "metadata": {"column_names": [], "column_types": ["int", "int", "float", "str", "float", "float", "float", "float"], "columns": 8, "comment_lines": 0, "data_lines": 82885, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragmen.BIH4BLOODEXPOSOME.tabular", "peek": "_MESURED_MONOISOTOPIC_MASS_\t_PPM_ERROR_\t_COMPUTED_MONOISOTOPIC_MASS_\t_ANNOTATION_NAME_\t_ANNOTATION_TYPE_\t_ANNOTATION_IN_NEG_MODE_\t_ANNOTATION_IN_POS_MODE_\t_ANNOTATION_FORMULA_\n674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t0\t0\tNA\tNA\tNA\tNA\tNA\n674\t0\t0\tNA\tNA\tNA\tNA\tNA\n", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 10:20:15.946200", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "queued", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:56:48.681710", "dataset_uuid": "519086d9-8e01-4fb5-a086-debfb1113ca8", "deleted": false, "designation": "variableMetadata", "encoded_id": "b379da601dbce29e", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/HR2_formula_TSV_580.tabular", "hid": 580, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": null, "metadata": {"column_names": [], "column_types": [], "columns": 0, "comment_lines": 0, "data_lines": 0, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "HR2 formula_TSV", "peek": null, "state": "running", "tags": [], "tool_version": null, "update_time": "2022-07-11 08:56:52.263881", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "queued", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:56:48.681717", "dataset_uuid": "23538dc5-a51a-4455-bf2a-abbadf110ca7", "deleted": false, "designation": "hr2ResView", "encoded_id": "e86562c804ca5387", "extension": "html", "file_metadata": {}, "file_name": "datasets/HR2_formula_VIEW_581.html", "hid": 581, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": null, "metadata": {"data_lines": 0, "dbkey": "?"}, "model_class": "HistoryDatasetAssociation", "name": "HR2 formula_VIEW", "peek": null, "state": "running", "tags": [], "tool_version": null, "update_time": "2022-07-11 08:56:52.263881", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "0 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:57:48.400497", "dataset_uuid": "a91187da-b53a-4622-a733-a57962de08c5", "deleted": false, "designation": "GolmOutTab", "encoded_id": "681d5df1cc46e913", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/peaklist_fragmen.GOLM.tabular_593.tabular", "hid": 593, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nCan't locate List/MoreUtils.pm in @INC (you may need to install the List::MoreUtils module) (@INC contains: /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search /galaxy/server/datab", "metadata": {"column_names": [], "column_types": ["str"], "columns": 1, "comment_lines": 0, "data_lines": 0, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragmen.GOLM.tabular", "peek": "", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 08:57:58.708891", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "0 bytes", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:57:48.400509", "dataset_uuid": "5c3b230f-5a9d-4580-93b7-d2096e96de92", "deleted": false, "designation": "GolmOutWeb", "encoded_id": "fa68e87a50af12b3", "extension": "html", "file_metadata": {}, "file_name": "datasets/peaklist_fragmen.GOLM_WEB.html_594.html", "hid": 594, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nCan't locate List/MoreUtils.pm in @INC (you may need to install the List::MoreUtils module) (@INC contains: /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search /galaxy/server/datab", "metadata": {"data_lines": 0, "dbkey": "?"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragmen.GOLM_WEB.html", "peek": "HTML file", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 08:57:58.708894", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "0 lines", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:57:48.400515", "dataset_uuid": "2619df53-ccee-4de4-b16d-521e81212987", "deleted": false, "designation": "GolmOutXlsx", "encoded_id": "5c30ceded02186bf", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/peaklist_fragmen.GOLM.txt_595.tabular", "hid": 595, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nCan't locate List/MoreUtils.pm in @INC (you may need to install the List::MoreUtils module) (@INC contains: /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search /galaxy/server/datab", "metadata": {"column_names": [], "column_types": ["str"], "columns": 1, "comment_lines": 0, "data_lines": 0, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "peaklist_fragmen.GOLM.txt", "peek": "", "state": "ok", "tags": [], "tool_version": "", "update_time": "2022-07-11 09:50:19.923606", "validated_state": "unknown", "validated_state_message": null, "visible": true}, {"annotation": null, "blurb": "error", "copied_from_history_dataset_association_id_chain": [], "create_time": "2022-07-11 08:58:27.161061", "dataset_uuid": "25758f79-9a34-47f8-9bb4-b4896d8efadc", "deleted": false, "designation": "out_file1", "encoded_id": "79c7ce84f3ac839b", "extension": "tabular", "file_metadata": {}, "file_name": "datasets/Compute_on_data_42_602.tabular", "hid": 602, "history_encoded_id": "2ed2d0cb9d9fff8e", "info": "\nFile \"/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/626658afe4cb/column_maker/column_maker.py\", line 107\n exec code\n ^^^^^^^^^\nSyntaxError: Missing parentheses in call to 'exec'. Did you mean exec(...)?", "metadata": {"column_names": [], "column_types": ["int", "int", "int", "int", "int", "float", "float", "float", "float", "int", "int", "int", "int", "int"], "columns": 14, "comment_lines": 0, "data_lines": 82885, "dbkey": "?", "delimiter": "\t"}, "model_class": "HistoryDatasetAssociation", "name": "Compute on data 42", "peek": "no peek", "state": "error", "tags": [], "tool_version": "", "update_time": "2022-07-11 08:58:32.766199", "validated_state": "unknown", "validated_state_message": null, "visible": true}] \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/jobs_attrs.txt Tue Jul 19 07:36:57 2022 +0000 @@ -0,0 +1,1 @@ +[{"command_line": "python '/galaxy/server/lib/galaxy/tools/data_fetch.py' --galaxy-root '/galaxy/server' --datatypes-registry '/galaxy/data/jobs_directory/088/88074/registry.xml' --request-version '1' --request '/galaxy/data/jobs_directory/088/88074/configs/tmp1uj_scc4'", "create_time": "2022-06-23T07:41:06.284983", "encoded_id": "babcc3d885e41dc5", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {}, "job_messages": [], "job_stderr": "", "job_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88074/working', 'HOME': '/galaxy/data/jobs_directory/088/88074/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88074/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88074/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88074', '_': '/galaxy/server/.venv/bin/python'})\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"output0": ["9e77b3d7d0887128"]}, "params": {"file_count": "1", "files": [{"__index__": 0, "file_data": "/galaxy/data/tmp/c400d309afc6474c8b5d1900ad47051a"}], "paramfile": null, "request_json": "{\"targets\": [{\"destination\": {\"type\": \"hdas\"}, \"elements\": [{\"src\": \"path\", \"name\": \"test.rdata\", \"dbkey\": \"?\", \"ext\": \"auto\", \"space_to_tab\": false, \"to_posix_lines\": true, \"hashes\": [], \"in_place\": false, \"purge_source\": false, \"path\": \"/galaxy/data/tmp/c400d309afc6474c8b5d1900ad47051a\", \"object_id\": 232343}]}], \"auto_decompress\": true, \"check_content\": true}", "request_version": "1"}, "state": "ok", "tool_id": "__DATA_FETCH__", "tool_stderr": "", "tool_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88074/working', 'HOME': '/galaxy/data/jobs_directory/088/88074/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88074/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88074/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88074', '_': '/galaxy/server/.venv/bin/python'})\n", "tool_version": "0.1.0", "traceback": null, "update_time": "2022-06-23T07:41:14.746997"}, {"command_line": "python '/galaxy/server/lib/galaxy/tools/data_fetch.py' --galaxy-root '/galaxy/server' --datatypes-registry '/galaxy/data/jobs_directory/088/88094/registry.xml' --request-version '1' --request '/galaxy/data/jobs_directory/088/88094/configs/tmpnio5usis'", "create_time": "2022-06-23T14:20:21.490077", "encoded_id": "dce03405192194a9", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {}, "job_messages": [], "job_stderr": "", "job_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88094/working', 'HOME': '/galaxy/data/jobs_directory/088/88094/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88094/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88094/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88094', '_': '/galaxy/server/.venv/bin/python'})\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"output0": ["9a0ce47bd1734ae7"]}, "params": {"file_count": "1", "files": [{"__index__": 0, "file_data": "/galaxy/data/tmp/e44f6de2f1fd410ab5ab76d3589ed689"}], "paramfile": null, "request_json": "{\"targets\": [{\"destination\": {\"type\": \"hdas\"}, \"elements\": [{\"src\": \"path\", \"name\": \"peaklist_fragments.tsv\", \"dbkey\": \"?\", \"ext\": \"auto\", \"space_to_tab\": false, \"to_posix_lines\": true, \"hashes\": [], \"in_place\": false, \"purge_source\": false, \"path\": \"/galaxy/data/tmp/e44f6de2f1fd410ab5ab76d3589ed689\", \"object_id\": 232384}]}], \"auto_decompress\": true, \"check_content\": true}", "request_version": "1"}, "state": "ok", "tool_id": "__DATA_FETCH__", "tool_stderr": "", "tool_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88094/working', 'HOME': '/galaxy/data/jobs_directory/088/88094/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88094/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88094/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88094', '_': '/galaxy/server/.venv/bin/python'})\n", "tool_version": "0.1.0", "traceback": null, "update_time": "2022-06-23T14:20:30.838847"}, {"command_line": "python '/galaxy/server/lib/galaxy/datatypes/converters/tabular_csv.py' -o '/galaxy/data/files/000/168/dataset_168768.dat' -i '/galaxy/data/files/000/168/dataset_168730.dat'", "create_time": "2022-06-23T14:31:06.269843", "encoded_id": "5ecaee8292cae53a", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"csv": ["eee378ebc66a66f1"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"tabular": ["2163bfdc66d76d11"]}, "params": {"__input_ext": "input", "__target_datatype__": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "csv": {"values": [{"id": "eee378ebc66a66f1", "src": "hda"}]}, "dbkey": "?"}, "state": "ok", "tool_id": "csv_to_tabular", "tool_stderr": "", "tool_stdout": "", "tool_version": "1.0.0", "traceback": null, "update_time": "2022-06-23T14:31:36.295672"}, {"command_line": "python '/galaxy/server/lib/galaxy/tools/data_fetch.py' --galaxy-root '/galaxy/server' --datatypes-registry '/galaxy/data/jobs_directory/088/88095/registry.xml' --request-version '1' --request '/galaxy/data/jobs_directory/088/88095/configs/tmp48lfm8zy'", "create_time": "2022-06-23T14:20:21.919823", "encoded_id": "dc7f2bdc13c2a0c6", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {}, "job_messages": [], "job_stderr": "", "job_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88095/working', 'HOME': '/galaxy/data/jobs_directory/088/88095/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88095/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88095/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88095', '_': '/galaxy/server/.venv/bin/python'})\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"output0": ["eee378ebc66a66f1"]}, "params": {"file_count": "1", "files": [{"__index__": 0, "file_data": "/galaxy/data/tmp/7964e374d9fa423cb3438b054c7f91f0"}], "paramfile": null, "request_json": "{\"targets\": [{\"destination\": {\"type\": \"hdas\"}, \"elements\": [{\"src\": \"path\", \"name\": \"peaklist_precursors.csv\", \"dbkey\": \"?\", \"ext\": \"auto\", \"space_to_tab\": false, \"to_posix_lines\": true, \"hashes\": [], \"in_place\": false, \"purge_source\": false, \"path\": \"/galaxy/data/tmp/7964e374d9fa423cb3438b054c7f91f0\", \"object_id\": 232385}]}], \"auto_decompress\": true, \"check_content\": true}", "request_version": "1"}, "state": "ok", "tool_id": "__DATA_FETCH__", "tool_stderr": "", "tool_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88095/working', 'HOME': '/galaxy/data/jobs_directory/088/88095/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88095/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88095/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88095', '_': '/galaxy/server/.venv/bin/python'})\n", "tool_version": "0.1.0", "traceback": null, "update_time": "2022-06-23T14:20:30.810748"}, {"command_line": "python '/galaxy/server/lib/galaxy/tools/data_fetch.py' --galaxy-root '/galaxy/server' --datatypes-registry '/galaxy/data/jobs_directory/088/88096/registry.xml' --request-version '1' --request '/galaxy/data/jobs_directory/088/88096/configs/tmp21wve2gl'", "create_time": "2022-06-23T14:20:22.336673", "encoded_id": "1b54d7f01620ea51", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {}, "job_messages": [], "job_stderr": "", "job_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88096/working', 'HOME': '/galaxy/data/jobs_directory/088/88096/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88096/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88096/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88096', '_': '/galaxy/server/.venv/bin/python'})\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"output0": ["7cf499d16bd542b2"]}, "params": {"file_count": "1", "files": [{"__index__": 0, "file_data": "/galaxy/data/tmp/2e503324d9d54059953fac2d6151c762"}], "paramfile": null, "request_json": "{\"targets\": [{\"destination\": {\"type\": \"hdas\"}, \"elements\": [{\"src\": \"path\", \"name\": \"compounds_pos.txt\", \"dbkey\": \"?\", \"ext\": \"auto\", \"space_to_tab\": false, \"to_posix_lines\": true, \"hashes\": [], \"in_place\": false, \"purge_source\": false, \"path\": \"/galaxy/data/tmp/2e503324d9d54059953fac2d6151c762\", \"object_id\": 232386}]}], \"auto_decompress\": true, \"check_content\": true}", "request_version": "1"}, "state": "ok", "tool_id": "__DATA_FETCH__", "tool_stderr": "", "tool_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88096/working', 'HOME': '/galaxy/data/jobs_directory/088/88096/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88096/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88096/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88096', '_': '/galaxy/server/.venv/bin/python'})\n", "tool_version": "0.1.0", "traceback": null, "update_time": "2022-06-23T14:20:30.164478"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"batch_correction\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168768.dat\" variableMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"linear\" span \"none\" valnull \"none\" ref_factor \"batch\" detail \"no\" dataMatrix_out \"/galaxy/data/files/000/168/dataset_168769.dat\" variableMetadata_out \"/galaxy/data/files/000/168/dataset_168770.dat\" graph_output \"/galaxy/data/files/000/168/dataset_168771.dat\" rdata_output \"XXXX\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-06-23T14:31:06.422486", "encoded_id": "edbf4dd0b89c2c7c", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["2163bfdc66d76d11"], "variableMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "job_stdout": "\nJob starting time:\n Thu 23 Jun 2022 14:31:37 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"batch_correction\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168768.dat\"\n\n$variableMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$method\n[1] \"linear\"\n\n$span\n[1] \"none\"\n\n$valnull\n[1] \"none\"\n\n$ref_factor\n[1] \"batch\"\n\n$detail\n[1] \"no\"\n\n$dataMatrix_out\n[1] \"/galaxy/data/files/000/168/dataset_168769.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/168/dataset_168770.dat\"\n\n$graph_output\n[1] \"/galaxy/data/files/000/168/dataset_168771.dat\"\n\n$rdata_output\n[1] \"XXXX\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["c5ca7f991d61f101"], "graph_output": ["6af431f3dc1eb3b6"], "variableMetadata_out": ["48b0abe0eb507b5c"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata": {"values": [{"id": "2163bfdc66d76d11", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}, "span_condition": {"__current_case__": 0, "detail": "no", "method": "linear", "ref_factor": "batch", "valnull": "none"}, "variableMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Thu 23 Jun 2022 14:31:37 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"batch_correction\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168768.dat\"\n\n$variableMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$method\n[1] \"linear\"\n\n$span\n[1] \"none\"\n\n$valnull\n[1] \"none\"\n\n$ref_factor\n[1] \"batch\"\n\n$detail\n[1] \"no\"\n\n$dataMatrix_out\n[1] \"/galaxy/data/files/000/168/dataset_168769.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/168/dataset_168770.dat\"\n\n$graph_output\n[1] \"/galaxy/data/files/000/168/dataset_168771.dat\"\n\n$rdata_output\n[1] \"XXXX\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-06-23T14:31:45.837046"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/acdf51018708/qualitymetrics/qualitymetrics_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" CV \"FALSE\" Compa \"TRUE\" seuil \"1\" poolAsPool1L \"TRUE\" sampleMetadata_out \"/galaxy/data/files/000/168/dataset_168779.dat\" variableMetadata_out \"/galaxy/data/files/000/168/dataset_168780.dat\" figure \"/galaxy/data/files/000/168/dataset_168781.dat\" information \"/galaxy/data/files/000/168/dataset_168782.dat\"", "create_time": "2022-06-23T14:48:34.259987", "encoded_id": "73f66eec3f22fc5f", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: QualityControl -> check.err\nExecution halted\n", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["cde3b5fe6f69767f"], "information": ["5d4ae66c2a9bcd5c"], "sampleMetadata_out": ["ca9b35e445ec8625"], "variableMetadata_out": ["025e42e3cdfe620d"]}, "params": {"CV_condition": {"CV": "FALSE", "Compa": "TRUE", "__current_case__": 1, "seuil": "1"}, "__input_ext": "tabular", "advPar": {"__current_case__": 1, "optC": "default", "poolAsPool1L": "TRUE"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: QualityControl -> check.err\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.8", "traceback": null, "update_time": "2022-06-23T14:48:45.202064"}, {"command_line": "python '/galaxy/server/lib/galaxy/tools/data_fetch.py' --galaxy-root '/galaxy/server' --datatypes-registry '/galaxy/data/jobs_directory/088/88292/registry.xml' --request-version '1' --request '/galaxy/data/jobs_directory/088/88292/configs/tmpqb5qsrok'", "create_time": "2022-06-24T13:59:22.519831", "encoded_id": "eecaf5ecc79ffb26", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {}, "job_messages": [], "job_stderr": "", "job_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88292/working', 'HOME': '/galaxy/data/jobs_directory/088/88292/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88292/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88292/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88292', '_': '/galaxy/server/.venv/bin/python'})\n", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"output0": ["7a313ff05bbcce6c"]}, "params": {"file_count": "1", "files": [{"__index__": 0, "file_data": "/galaxy/data/tmp/88d2ff5c70f646e182b4b058607d486d"}], "paramfile": null, "request_json": "{\"targets\": [{\"destination\": {\"type\": \"hdas\"}, \"elements\": [{\"src\": \"path\", \"name\": \"image.png\", \"dbkey\": \"?\", \"ext\": \"auto\", \"space_to_tab\": false, \"to_posix_lines\": true, \"hashes\": [], \"in_place\": false, \"purge_source\": false, \"path\": \"/galaxy/data/tmp/88d2ff5c70f646e182b4b058607d486d\", \"object_id\": 232870}]}], \"auto_decompress\": true, \"check_content\": true}", "request_version": "1"}, "state": "ok", "tool_id": "__DATA_FETCH__", "tool_stderr": "", "tool_stdout": "environ({'GALAXY_SLOTS': '1', 'PWD': '/galaxy/data/jobs_directory/088/88292/working', 'HOME': '/galaxy/data/jobs_directory/088/88292/home', '_GALAXY_JOB_HOME_DIR': '/galaxy/data/jobs_directory/088/88292/home', 'TMPDIR': '/galaxy/data/tmp', 'PYTHONPATH': '/galaxy/server/lib', 'SHLVL': '2', 'LC_CTYPE': 'C.UTF-8', '_GALAXY_JOB_TMP_DIR': '/galaxy/data/jobs_directory/088/88292/tmp', 'PATH': '/galaxy/server/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'PYTHONWARNINGS': 'ignore', 'OLDPWD': '/galaxy/data/jobs_directory/088/88292', '_': '/galaxy/server/.venv/bin/python'})\n", "tool_version": "0.1.0", "traceback": null, "update_time": "2022-06-24T13:59:30.324598"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/512c2b701d96/camera_annotate//CAMERA_annotateDiffreport.r image '/galaxy/data/files/000/168/dataset_168688.dat' nSlaves ${GALAXY_SLOTS:-1} sigma 6 perfwhm 0.6 ppm 5 mzabs 0.015 maxcharge 3 maxiso 4 minfrac 0.5 quick FALSE cor_eic_th 0.75 graphMethod hcs pval 0.05 calcCiS TRUE calcIso FALSE calcCaS FALSE polarity negative max_peaks 100 multiplier 3 convertRTMinute FALSE numDigitsMZ 4 numDigitsRT 0 intval into", "create_time": "2022-06-27T13:49:20.732112", "encoded_id": "e2a7c6eedf3bb175", "exit_code": null, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": "Job output deleted by user before job completed.", "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [], "job_stderr": "Terminated\n", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"rdata_quick_false": ["f6ca532f978b6783"], "variableMetadata": ["b3513c3f0773cb5b"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "diffreport": {"options": {"__current_case__": 1, "option": "hide"}}, "export": {"convertRTMinute": "false", "intval": "into", "numDigitsMZ": "4", "numDigitsRT": "0"}, "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "findgeneral": {"mzabs": "0.015", "ppm": "5"}, "findisotopes": {"maxcharge": "3", "maxiso": "4", "minfrac": "0.5"}, "groupfwhm": {"perfwhm": "0.6", "sigma": "6"}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "quick_block": {"__current_case__": 0, "findadducts": {"max_peaks": "100", "polarity": "negative", "rules_block": {"__current_case__": 0, "multiplier": "3", "rules_select": "FALSE"}}, "groupcorr": {"calcCaS": "false", "calcCiS": "true", "calcIso": "false", "cor_eic_th": "0.75", "graphMethod": "hcs", "pval": "0.05"}, "quick": "FALSE"}}, "state": "deleted", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.6+camera1.48.0-galaxy0", "tool_stderr": "", "tool_stdout": "", "tool_version": "2.2.6+camera1.48.0-galaxy0", "traceback": null, "update_time": "2022-06-27T13:50:30.858886"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/29ec7e3afdd4/corr_table/CorrTable/Corr_wrap.r tab1_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab2_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab1_samples \"row\" tab2_samples \"row\" corr_method \"pearson\" test_corr \"no\" filter \"no\" reorder_var \"no\" plot_choice \"auto\" color_heatmap \"no\" tabcorr_out \"/galaxy/data/files/000/169/dataset_169532.dat\" heatmap_out \"/galaxy/data/files/000/169/dataset_169533.dat\"", "create_time": "2022-06-30T14:36:54.969946", "encoded_id": "befb011fe8eee32e", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"tab1_in": ["7cf499d16bd542b2"], "tab2_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"heatmap_out": ["a6325bfdec96455f"], "tabcorr_out": ["5fb07fb4433ff938"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "corr_method": "pearson", "dbkey": "?", "filter_section": {"filter_cond": {"__current_case__": 1, "filter": "no"}, "testcorr_cond": {"__current_case__": 1, "test_corr": "no"}}, "out_section": {"plot_cond": {"__current_case__": 0, "heatmap_cond": {"__current_case__": 1, "color_heatmap": "no"}, "plot_choice": "auto"}, "reorder_var": "no"}, "tab1_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab1_samples": "row", "tab2_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab2_samples": "row"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/corrtable/1.0.0", "tool_stderr": "/galaxy/data/jobs_directory/088/88454/tool_script.sh: line 43: Rscript: command not found\n", "tool_stdout": "", "tool_version": "1.0.0", "traceback": null, "update_time": "2022-06-30T14:38:15.366451"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/29ec7e3afdd4/corr_table/CorrTable/Corr_wrap.r tab1_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab2_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab1_samples \"row\" tab2_samples \"row\" corr_method \"pearson\" test_corr \"no\" filter \"no\" reorder_var \"no\" plot_choice \"auto\" color_heatmap \"no\" tabcorr_out \"/galaxy/data/files/000/169/dataset_169534.dat\" heatmap_out \"/galaxy/data/files/000/169/dataset_169535.dat\"", "create_time": "2022-06-30T14:40:34.142455", "encoded_id": "37480a1109d7a8ae", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"tab1_in": ["7cf499d16bd542b2"], "tab2_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"heatmap_out": ["b8c15df65a5424cf"], "tabcorr_out": ["b7a7a1e8b4aae9ee"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "corr_method": "pearson", "dbkey": "?", "filter_section": {"filter_cond": {"__current_case__": 1, "filter": "no"}, "testcorr_cond": {"__current_case__": 1, "test_corr": "no"}}, "out_section": {"plot_cond": {"__current_case__": 0, "heatmap_cond": {"__current_case__": 1, "color_heatmap": "no"}, "plot_choice": "auto"}, "reorder_var": "no"}, "tab1_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab1_samples": "row", "tab2_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab2_samples": "row"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/corrtable/1.0.0", "tool_stderr": "/galaxy/data/jobs_directory/088/88455/tool_script.sh: line 43: Rscript: command not found\n", "tool_stdout": "", "tool_version": "1.0.0", "traceback": null, "update_time": "2022-06-30T14:41:54.404244"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/49c36c54e0cf/intensity_checks/Intchecks/wrapper_intensity_check.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168731.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" method \"no_class\" chosen_stat \"None\" variableMetadata_out \"/galaxy/data/files/000/169/dataset_169536.dat\" graphs_out \"/galaxy/data/files/000/169/dataset_169537.dat\"", "create_time": "2022-06-30T14:42:47.727633", "encoded_id": "02f0adf7c5d225ff", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["7cf499d16bd542b2"], "sampleMetadata_in": ["7cf499d16bd542b2"], "variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"graphs_out": ["cfb84390be448f29"], "variableMetadata_out": ["f1310bf93c1a4ff8"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "method_cond": {"__current_case__": 0, "chosen_stat": null, "method": "no_class"}, "sampleMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/intens_check/1.2.8", "tool_stderr": "Error: \n- - - - - - - - -\nYou did not select any computational option. Program can not be executed.\n- - - - - - - - -\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Thu 30 Jun 2022 14:42:50 \n\n-------------------------------------------------------------------- \nIntensity Check parameters:\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sampleMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$variableMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$method\n[1] \"no_class\"\n\n$chosen_stat\n[1] \"None\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/169/dataset_169536.dat\"\n\n$graphs_out\n[1] \"/galaxy/data/files/000/169/dataset_169537.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "1.2.8", "traceback": null, "update_time": "2022-06-30T14:42:54.586704"}, {"command_line": "perl /galaxy/server/database/shed_tools/testtoolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/d24ae049de95/hmdb_ms_search/wsdl_hmdb.pl -masses \"/galaxy/data/files/000/168/dataset_168731.dat\" -header_choice \"yes\" -nblineheader \"1\" -colfactor \"1\" -output_tabular \"/galaxy/data/files/000/169/dataset_169538.dat\" -output_html \"/galaxy/data/files/000/169/dataset_169539.dat\" -output_xls \"/galaxy/data/files/000/169/dataset_169540.dat\" -mode \"neutral\" -adduct_type \"M\" -delta \"0.05\" -maxquery \"10\" -advancedFeatures \"0\" -verbose \"1\"", "create_time": "2022-06-30T14:44:08.082109", "encoded_id": "860e49080a429725", "exit_code": 255, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"masses": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"HmdbOutWeb": ["7650ce17083ff8aa"], "HmdbOutXlsx": ["025a8803790c5fca"], "variableMetadata": ["0c9ca1e989f7f984"]}, "params": {"__input_ext": "tabular", "advancedFeatures": "0", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "delta": "0.05", "input_type": {"__current_case__": 0, "choice": "YES", "colfactor": "1", "header": {"__current_case__": 0, "header_choice": "yes", "nbHeader": "1"}, "masses": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "maxquery": "10", "mode_type": {"__current_case__": 2, "data_neutral_adducts": ["M"], "mode": "neutral"}, "verbose": "1"}, "state": "ok", "tool_id": "testtoolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/wsdl_hmdb/1.6.1", "tool_stderr": "Error POSTing http://specdb.wishartlab.com/ms/search.csv: Internal Server Error at /galaxy/server/database/shed_tools/testtoolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/d24ae049de95/hmdb_ms_search/lib/hmdb.pm line 321.\n", "tool_stdout": "\tTesting HMDB server connexion (1 time(s) )...\n", "tool_version": "1.6.1", "traceback": null, "update_time": "2022-06-30T14:44:15.115004"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/bb19b1d15732/idchoice/IDchoice/IDchoice_wrap.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168731.dat\" Metadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" metatype \"variable\" col_name \"\" makeunique \"no\" DM_out \"/galaxy/data/files/000/169/dataset_169541.dat\" meta_out \"/galaxy/data/files/000/169/dataset_169542.dat\"", "create_time": "2022-06-30T14:46:49.983057", "encoded_id": "6196d56089936f35", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"Metadata_in": ["7cf499d16bd542b2"], "dataMatrix_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"DM_out": ["b5c96d611ce0d0b7"], "meta_out": ["51e8e0af03482c6b"]}, "params": {"Metadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "col_name": "", "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "makeunique": "no", "metatype": "variable"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/idchoice/19.12", "tool_stderr": "Error in id.choice(args$dataMatrix_in, args$Metadata_in, args$metatype, : \n \n-------\nWarning: no '' column detected in variable metadata!\nPlease check your metadata file (column names are case-sensitive).\n-------\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Thu 30 Jun 2022 14:47:31 \n\n-------------------------------------------------------------------- \nParameters used in \"ID choice\":\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$Metadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$metatype\n[1] \"variable\"\n\n$col_name\n[1] \"\"\n\n$makeunique\n[1] \"no\"\n\n$DM_out\n[1] \"/galaxy/data/files/000/169/dataset_169541.dat\"\n\n$meta_out\n[1] \"/galaxy/data/files/000/169/dataset_169542.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "19.12", "traceback": null, "update_time": "2022-06-30T14:47:35.285092"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl -f \"/galaxy/data/files/000/168/dataset_168731.dat\" -m \"/galaxy/data/files/000/168/dataset_168731.dat\" -o 2 -d \"/galaxy/data/files/000/168/dataset_168731.dat\" -v \"/galaxy/data/files/000/168/dataset_168731.dat\" -rt \"0.1\" -mass \"0.005\" -r \"intensity\" -correl \"0.9\" -output_sif \"/galaxy/data/files/000/169/dataset_169543.dat\" -output_tabular \"/galaxy/data/files/000/169/dataset_169544.dat\"", "create_time": "2022-06-30T14:47:53.997938", "encoded_id": "11a26d69899a980e", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["7cf499d16bd542b2"], "file_in": ["7cf499d16bd542b2"], "mass_file|mass_file_in": ["7cf499d16bd542b2"], "variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sif_out": ["439a8d05732cb9ce"], "variableMetadata_out": ["f517e0df347ef708"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "correl_threshold": "0.9", "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "file_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "mass_file": {"__current_case__": 0, "liste": {"__current_case__": 1, "mass_file_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "mass_list": "true"}, "mass_choice": "true", "mass_threshold": "0.005"}, "repres_opt": {"__current_case__": 1, "repres_opt_selector": "intensity"}, "rt_cond": {"__current_case__": 0, "rt_choice": "true", "rt_threshold": "0.1"}, "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/acorf/Analytic_correlation_filtration/2019-06-20", "tool_stderr": "Use of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 2.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 2.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 3.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 3.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 4.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 4.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 5.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 5.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 6.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 6.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 7.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 7.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 8.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 8.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 9.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 9.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 10.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 10.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 11.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 11.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 12.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 12.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 13.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 13.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 14.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 14.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 15.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 15.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 16.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 16.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 17.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 17.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 18.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 18.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 19.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 19.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 20.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 20.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 21.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 21.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 22.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 22.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 23.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 23.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 24.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 24.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 25.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 25.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 26.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 26.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 27.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 27.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 28.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 28.\nUse of uninitialized value $bmass in subtraction (-) at 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/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 41.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 41.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 42.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 42.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 43.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 43.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 44.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 44.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 45.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 45.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 46.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 46.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 47.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 47.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 48.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 48.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 49.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 49.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 50.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 50.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 51.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 51.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 52.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 52.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 53.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 53.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 54.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 54.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 55.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 55.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 56.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 56.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 57.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 57.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 58.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 58.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 59.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 59.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 60.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 60.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 61.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 61.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 62.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 62.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 63.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 63.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 64.\nArgument \"rt\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 64.\n", "tool_stdout": "Cr\u00e9ation of a hash containing all adduits and fragments possible\nCreation of a sif table + correlation filtration done\nAnalytic correlation filtrering follow options done\nJoin groups that have been subdivided done\nAddition of annotation information among groups done\nChoose the representative ion for each group done\nAddition of annotation information relative to the representative ion done\nPrint in result file done\nAll steps done\n", "tool_version": "2019-06-20", "traceback": null, "update_time": "2022-06-30T14:47:59.718649"}, {"command_line": "Rscript '/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/workflow4metabolomics/correlation_analysis/58997c28b268/correlation_analysis/correlation_analysis.r' sorting 1 variable_metadata '/galaxy/data/files/000/168/dataset_168731.dat' data_matrix '/galaxy/data/files/000/168/dataset_168731.dat' sample_metadata '/galaxy/data/files/000/168/dataset_168731.dat' corrdel 0 param_correlation \"\" param_cytoscape \"\" matrix_corr 0 user_matrix_corr \"\" corr_method \"\"", "create_time": "2022-06-30T14:50:24.345558", "encoded_id": "3fccec56d0ed6d93", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["7cf499d16bd542b2"], "sampleMetadata": ["7cf499d16bd542b2"], "variableMetadata": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sorted_table": ["73bd812cd7c67138"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "cond_input_type": {"__current_case__": 0, "cond_function": {"__current_case__": 0, "select_funtion": "sort_only"}, "dataMatrix": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "sampleMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "select_input_type": "select_input_from_w4m", "variableMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "dbkey": "?"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/workflow4metabolomics/correlation_analysis/correlation_analysis/1.0.1+galaxy0", "tool_stderr": "Error in `[.data.frame`(new_input, \"pcgroup\") : \n undefined columns selected\nCalls: do.call ... sorting -> cbind -> cbind -> data.frame -> [ -> [.data.frame\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Thu 30 Jun 2022 14:50:31 \n\n-------------------------------------------------------------------- \nParameters used in 'Metabolites Correlation Analysis':\n\n$sorting\n[1] 1\n\n$variable_metadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$data_matrix\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sample_metadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$corrdel\n[1] 0\n\n$param_correlation\n[1] \"\"\n\n$param_cytoscape\n[1] \"\"\n\n$matrix_corr\n[1] 0\n\n$user_matrix_corr\n[1] \"\"\n\n$corr_method\n[1] \"\"\n\n--------------------------------------------------------------------\n\n\nExecuting the sorting function\n", "tool_version": "1.0.1+galaxy0", "traceback": null, "update_time": "2022-06-30T14:50:35.009509"}, {"command_line": "Rscript /galaxy/server/tools/multivariate/multivariate.R --dataMatrix_in \"/galaxy/data/files/000/168/dataset_168731.dat\" --sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" --variableMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" --response_component \"1\" --predictive_component_number \"NA\" --orthogonal_component_number \"0\" --test_sample \"FALSE\" --graphic_type \"summary\" --color_parameter \"None\" --magnify_text \"0.8\" --abcissa_parameter \"1\" --ordinate_parameter \"2\" --ellipsis_component \"NA\" --labels_parameter \"None\" --algorithm \"default\" --cross_validation_number \"7\" --log10L \"FALSE\" --permutation_number \"20\" --scaling \"standard\" --sampleMetadata_out \"/galaxy/data/files/000/169/dataset_169562.dat\" --variableMetadata_out \"/galaxy/data/files/000/169/dataset_169563.dat\" --figure \"/galaxy/data/files/000/169/dataset_169564.dat\" --information \"/galaxy/data/files/000/169/dataset_169565.dat\"", "create_time": "2022-07-06T12:30:49.333121", "encoded_id": "0e3b06a9760e7e54", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["7cf499d16bd542b2"], "sampleMetadata_in": ["7cf499d16bd542b2"], "variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["0f507ef71e586927"], "information": ["94ccd7faf1df2475"], "sampleMetadata_out": ["7d202099e4cbca62"], "variableMetadata_out": ["b940ef43d7de9b83"]}, "params": {"__input_ext": "input", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "compute": {"algorithm": "default", "cross_validation_number": "7", "log10L": "FALSE", "permutation_number": "20", "scaling": "standard"}, "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "graphics": {"abcissa_parameter": "1", "color_parameter": null, "ellipsis_component": "NA", "graphic_type": "summary", "labels_parameter": null, "magnify_text": "0.8", "ordinate_parameter": "2"}, "orthogonal_component_number": "0", "predictive_component_number": "NA", "response_component": "1", "sampleMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "save_rdata": "false", "test_sample": "FALSE", "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "Multivariate", "tool_stderr": "Error in stopaste(\"Sample names (or number) in the data matrix (first row) and sample\", : \n Sample names (or number) in the data matrix (first row) and sample metadata (first column) are not identical; use the 'Check Format' module in the 'Quality Control' section\nExecution halted\n", "tool_stdout": "$help\n[1] FALSE\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sampleMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$variableMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sampleMetadata_out\n[1] \"/galaxy/data/files/000/169/dataset_169562.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/169/dataset_169563.dat\"\n\n$figure\n[1] \"/galaxy/data/files/000/169/dataset_169564.dat\"\n\n$information\n[1] \"/galaxy/data/files/000/169/dataset_169565.dat\"\n\n$test_sample\n[1] FALSE\n\n$abcissa_parameter\n[1] 1\n\n$ordinate_parameter\n[1] 2\n\n$color_parameter\n[1] \"None\"\n\n$ellipsis_component\n[1] \"NA\"\n\n$labels_parameter\n[1] \"None\"\n\n$response_component\n[1] 1\n\n$magnify_text\n[1] 0.8\n\n$predictive_component_number\n[1] \"NA\"\n\n$orthogonal_component_number\n[1] 0\n\n$cross_validation_number\n[1] 7\n\n$log10L\n[1] FALSE\n\n$permutation_number\n[1] 20\n\n$algorithm\n[1] \"default\"\n\n$graphic_type\n[1] \"summary\"\n\n$scaling\n[1] \"standard\"\n\n", "tool_version": "2.4.0", "traceback": null, "update_time": "2022-07-06T12:30:56.059868"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/29ec7e3afdd4/corr_table/CorrTable/Corr_wrap.r tab1_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab2_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab1_samples \"row\" tab2_samples \"row\" corr_method \"pearson\" test_corr \"no\" filter \"no\" reorder_var \"no\" plot_choice \"auto\" color_heatmap \"no\" tabcorr_out \"/galaxy/data/files/000/169/dataset_169566.dat\" heatmap_out \"/galaxy/data/files/000/169/dataset_169567.dat\"", "create_time": "2022-07-06T13:35:26.961944", "encoded_id": "3c4d1d4b26ca3ec8", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"tab1_in": ["7cf499d16bd542b2"], "tab2_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"heatmap_out": ["af09080865e4f957"], "tabcorr_out": ["1aa9c5aa7406981e"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "corr_method": "pearson", "dbkey": "?", "filter_section": {"filter_cond": {"__current_case__": 1, "filter": "no"}, "testcorr_cond": {"__current_case__": 1, "test_corr": "no"}}, "out_section": {"plot_cond": {"__current_case__": 0, "heatmap_cond": {"__current_case__": 1, "color_heatmap": "no"}, "plot_choice": "auto"}, "reorder_var": "no"}, "tab1_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab1_samples": "row", "tab2_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab2_samples": "row"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/corrtable/1.0.0", "tool_stderr": "/galaxy/data/jobs_directory/088/88471/tool_script.sh: line 43: Rscript: command not found\n", "tool_stdout": "", "tool_version": "1.0.0", "traceback": null, "update_time": "2022-07-06T13:37:10.123402"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/512c2b701d96/camera_annotate//CAMERA_annotateDiffreport.r image '/galaxy/data/files/000/168/dataset_168688.dat' nSlaves ${GALAXY_SLOTS:-1} sigma 6 perfwhm 0.6 ppm 5 mzabs 0.015 maxcharge 3 maxiso 4 minfrac 0.5 quick FALSE cor_eic_th 0.75 graphMethod hcs pval 0.05 calcCiS TRUE calcIso FALSE calcCaS FALSE polarity negative max_peaks 100 multiplier 3 convertRTMinute FALSE numDigitsMZ 4 numDigitsRT 0 intval into", "create_time": "2022-07-11T08:39:16.258221", "encoded_id": "6ed4025329c9e5d0", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"rdata_quick_false": ["642ef015bdfdcfbd"], "variableMetadata": ["23bf8744844de732"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "diffreport": {"options": {"__current_case__": 1, "option": "hide"}}, "export": {"convertRTMinute": "false", "intval": "into", "numDigitsMZ": "4", "numDigitsRT": "0"}, 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Please, contact your administrator ... if you have one!\"\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:39:55.753780"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/b02d1992a43a/xcms_xcmsset//xcms_xcmsSet.r image '/galaxy/data/files/000/168/dataset_168688.dat' BPPARAM ${GALAXY_SLOTS:-1} method MatchedFilter fwhm 30 binSize 0.1 impute none max 5 snthresh 10 steps 2 mzdiff 0.6 peaklist FALSE ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:39:42.900215", "encoded_id": "5a7a543694e33064", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, 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\n\nERROR: The RData doesn't contain any object called 'raw_data' which is provided by the tool: MSnbase readMSData\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nBPPARAM\t1\nmethod\tMatchedFilter\nfwhm\t30\nbinSize\t0.1\nimpute\tnone\nmax\t5\nsnthresh\t10\nsteps\t2\nmzdiff\t0.6\npeaklist\tFALSE\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:40:01.417436"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/94eb263cfab4/xcms_export_samplemetadata//xcms_export_samplemetadata.r images 'c(\"/galaxy/data/files/000/168/dataset_168688.dat\")'", "create_time": "2022-07-11T08:39:45.857041", "encoded_id": "5254015dd067a0f3", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"images": ["9e77b3d7d0887128"], "images1": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sampleMetadataOutput": ["28e4d1d1e31dc516"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "images": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "R version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:40:01.236321"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/024974037c4e/xcms_plot_chromatogram///xcms_plot_chromatogram.r images 'c(\"/galaxy/data/files/000/168/dataset_168688.dat\")'", "create_time": "2022-07-11T08:39:48.737637", "encoded_id": "bb7535e772a96d24", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"images": ["9e77b3d7d0887128"], "images1": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"bpisPdf": ["cd6d99f979501c21"], "ticsPdf": ["96b988706e871cd3"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "images": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "sampleMetadata": null}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy0", "tool_stderr": "Error in retrieveRawfileInTheWorkingDir(singlefile, zipfile, args) : \n Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\nCalls: mergeXData -> retrieveRawfileInTheWorkingDir\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nRColorBrewer 1.1.2 \tbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimages\t/galaxy/data/files/000/168/dataset_168688.dat\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n[1] \"Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\"\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:40:05.077420"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/26d77e9ceb49/xcms_fillpeaks//xcms_fillpeaks.r image '/galaxy/data/files/000/168/dataset_168688.dat' expandMz 0 expandRt 0 ppm 0 convertRTMinute FALSE numDigitsMZ 4 numDigitsRT 0 intval into naTOzero TRUE ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:39:53.587990", "encoded_id": "7e48353c1f42ff66", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix": ["21da3783e86a28e3"], "variableMetadata": ["fd73fe24f6fc4b2e"], "xsetRData": ["d818ff394d3e3ddd"]}, "params": {"Adv": {"expandMz": "0", "expandRt": "0", "ppm": "0"}, "__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "peaklist": {"convertRTMinute": "false", "intval": "into", "naTOzero": "true", "numDigitsMZ": "4", "numDigitsRT": "0", "peaklistBool": "True"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nexpandMz\t0\nexpandRt\t0\nppm\t0\nconvertRTMinute\tFALSE\nnumDigitsMZ\t4\nnumDigitsRT\t0\nintval\tinto\nnaTOzero\tTRUE\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:40:09.877072"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/acdf51018708/qualitymetrics/qualitymetrics_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" CV \"FALSE\" Compa \"TRUE\" seuil \"1\" poolAsPool1L \"TRUE\" sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171120.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171121.dat\" figure \"/galaxy/data/files/000/171/dataset_171122.dat\" information \"/galaxy/data/files/000/171/dataset_171123.dat\"", "create_time": "2022-07-11T08:40:09.571159", "encoded_id": "b180d045500f6c4e", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["fb0711e800138cbd"], "information": ["5e70aaa537f49be4"], "sampleMetadata_out": ["f93d48900bd93149"], "variableMetadata_out": ["1a871a1529552d6b"]}, "params": {"CV_condition": {"CV": "FALSE", "Compa": "TRUE", "__current_case__": 1, "seuil": "1"}, "__input_ext": "tabular", "advPar": {"__current_case__": 1, "optC": "default", "poolAsPool1L": "TRUE"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: QualityControl -> check.err\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.8", "traceback": null, "update_time": "2022-07-11T08:40:32.686966"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/512c2b701d96/camera_annotate//CAMERA_annotateDiffreport.r image '/galaxy/data/files/000/168/dataset_168688.dat' nSlaves ${GALAXY_SLOTS:-1} sigma 6 perfwhm 0.6 ppm 5 mzabs 0.015 maxcharge 3 maxiso 4 minfrac 0.5 quick FALSE cor_eic_th 0.75 graphMethod 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"job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"rdata_quick_false": ["bdb5fc8459d92254"], "variableMetadata": ["db2f69db59e555e2"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "diffreport": {"options": {"__current_case__": 1, "option": "hide"}}, "export": {"convertRTMinute": "false", "intval": "into", "numDigitsMZ": "4", "numDigitsRT": "0"}, "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "findgeneral": {"mzabs": "0.015", "ppm": "5"}, "findisotopes": {"maxcharge": "3", "maxiso": "4", "minfrac": "0.5"}, "groupfwhm": {"perfwhm": "0.6", "sigma": "6"}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "quick_block": {"__current_case__": 0, "findadducts": {"max_peaks": "100", "polarity": "negative", "rules_block": {"__current_case__": 0, "multiplier": "3", "rules_select": 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max_peaks 100 multiplier 3 convertRTMinute FALSE numDigitsMZ 4 numDigitsRT 0 intval into", "create_time": "2022-07-11T08:46:43.720001", "encoded_id": "04bcbd95a98c7c86", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"rdata_quick_false": ["1f3299ca8647ede1"], "variableMetadata": ["e15b0ae531c85e00"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "diffreport": {"options": {"__current_case__": 1, "option": "hide"}}, "export": {"convertRTMinute": "false", "intval": "into", "numDigitsMZ": "4", "numDigitsRT": "0"}, "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "findgeneral": {"mzabs": "0.015", "ppm": "5"}, "findisotopes": {"maxcharge": "3", "maxiso": "4", "minfrac": "0.5"}, "groupfwhm": {"perfwhm": "0.6", "sigma": "6"}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "quick_block": {"__current_case__": 0, "findadducts": {"max_peaks": "100", "polarity": "negative", "rules_block": {"__current_case__": 0, "multiplier": "3", "rules_select": "FALSE"}}, "groupcorr": {"calcCaS": "false", "calcCiS": "true", "calcIso": "false", "cor_eic_th": "0.75", "graphMethod": "hcs", "pval": "0.05"}, "quick": "FALSE"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.6+camera1.48.0-galaxy0", "tool_stderr": "Error in retrieveRawfileInTheWorkingDir(singlefile, zipfile) : \n Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.1.3 (2022-03-10) \nMain packages:\nbatch 1.1.5 \tmulttest 2.48.0 \tCAMERA 1.48.0 \txcms 3.14.0 \tMSnbase 2.18.0 \tProtGenerics 1.24.0 \tS4Vectors 0.30.0 \tmzR 2.26.0 \tRcpp 1.0.9 \tBiocParallel 1.26.0 \tBiobase 2.52.0 \tBiocGenerics 0.38.0 \t\nOther loaded packages:\nbitops 1.0.7 \tmatrixStats 0.62.0 \tdoParallel 1.0.17 \tRColorBrewer 1.1.3 \tGenomeInfoDb 1.28.0 \ttools 4.1.3 \tbackports 1.4.1 \tutf8 1.2.2 \tR6 2.5.1 \taffyio 1.62.0 \trpart 4.1.16 \tHmisc 4.7.0 \tcolorspace 2.0.3 \tnnet 7.3.17 \tgridExtra 2.3 \tcompiler 4.1.3 \tMassSpecWavelet 1.58.0 \tpreprocessCore 1.54.0 \tgraph 1.70.0 \tcli 3.3.0 \thtmlTable 2.4.1 \tDelayedArray 0.18.0 \tscales 1.2.0 \tcheckmate 2.1.0 \tDEoptimR 1.0.11 \trobustbase 0.95.0 \taffy 1.70.0 \tRBGL 1.68.0 \tstringr 1.4.0 \tdigest 0.6.29 \tforeign 0.8.82 \tXVector 0.32.0 \thtmltools 0.5.2 \tbase64enc 0.1.3 \tjpeg 0.1.9 \tpkgconfig 2.0.3 \tMatrixGenerics 1.4.0 \tfastmap 1.1.0 \tlimma 3.48.0 \thtmlwidgets 1.5.4 \trlang 1.0.3 \trstudioapi 0.13 \timpute 1.66.0 \tmzID 1.30.0 \tRCurl 1.98.1.7 \tmagrittr 2.0.3 \tGenomeInfoDbData 1.2.6 \tFormula 1.2.4 \tinterp 1.1.2 \tMALDIquant 1.21 \tMatrix 1.4.1 \tmunsell 0.5.0 \tfansi 1.0.3 \tMsCoreUtils 1.4.0 \tlifecycle 1.0.1 \tvsn 3.60.0 \tstringi 1.7.6 \tMASS 7.3.57 \tSummarizedExperiment 1.22.0 \tzlibbioc 1.38.0 \tplyr 1.8.7 \tgrid 4.1.3 \tcrayon 1.5.1 \tdeldir 1.0.6 \tlattice 0.20.45 \tsplines 4.1.3 \tknitr 1.39 \tpillar 1.7.0 \tigraph 1.3.2 \tGenomicRanges 1.44.0 \tcodetools 0.2.18 \tXML 3.99.0.10 \tglue 1.6.2 \tlatticeExtra 0.6.30 \tdata.table 1.14.2 \tpcaMethods 1.84.0 \tBiocManager 1.30.18 \tvctrs 0.4.1 \tpng 0.1.7 \tforeach 1.5.2 \tgtable 0.3.0 \tRANN 2.6.1 \tclue 0.3.60 \tggplot2 3.3.6 \txfun 0.31 \tncdf4 1.19 \tsurvival 3.3.1 \ttibble 3.1.7 \titerators 1.0.14 \tIRanges 2.26.0 \tcluster 2.1.3 \tellipsis 0.3.2 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nnSlaves\t1\nsigma\t6\nperfwhm\t0.6\nppm\t5\nmzabs\t0.015\nmaxcharge\t3\nmaxiso\t4\nminfrac\t0.5\nquick\tFALSE\ncor_eic_th\t0.75\ngraphMethod\thcs\npval\t0.05\ncalcCiS\tTRUE\ncalcIso\tFALSE\ncalcCaS\tFALSE\npolarity\tnegative\nmax_peaks\t100\nmultiplier\t3\nconvertRTMinute\tFALSE\nnumDigitsMZ\t4\nnumDigitsRT\t0\nintval\tinto\n\n\n\tINFILE PROCESSING INFO\n\n\n\tARGUMENTS PROCESSING INFO\n[1] \"Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\"\n", "tool_version": "2.2.6+camera1.48.0-galaxy0", "traceback": null, "update_time": "2022-07-11T08:47:37.110444"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/aa252eec9229/xcms_retcor//xcms_retcor.r image '/galaxy/data/files/000/168/dataset_168688.dat' method PeakGroups minFraction 0.9 extraPeaks 1 smooth loess span 0.2 family gaussian ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:48:01.764176", "encoded_id": "b2724dcae8ff63d5", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"rawVSadjustedPdf": ["2346b035764945ff"], "xsetRData": ["36eb9fd45bc5adac"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "methods": {"__current_case__": 0, "extraPeaks": "1", "method": "PeakGroups", "minFraction": "0.9", "smooth_cond": {"PeakGroupsSmoothLoessAdv": {"family": "gaussian", "span": "0.2"}, "__current_case__": 0, "smooth": "loess"}}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nRColorBrewer 1.1.2 \tbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nmethod\tPeakGroups\nminFraction\t0.9\nextraPeaks\t1\nsmooth\tloess\nspan\t0.2\nfamily\tgaussian\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:16.715487"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/018a9771de28/xcms_summary//xcms_summary.r image '/galaxy/data/files/000/168/dataset_168688.dat' htmlOutput '/galaxy/data/files/000/171/dataset_171132.dat' user_email lain.pavot@inrae.fr", "create_time": "2022-07-11T08:48:05.438055", "encoded_id": "65c391e765a411df", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"htmlOutput": ["7cae6b1fc3f566d0"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/abims_xcms_summary/3.12.0+galaxy0", "tool_stderr": "", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \tCAMERA 1.46.0 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nbitops 1.0.7 \tmatrixStats 0.62.0 \tdoParallel 1.0.17 \tRColorBrewer 1.1.3 \tGenomeInfoDb 1.26.4 \ttools 4.0.5 \tbackports 1.4.1 \tutf8 1.2.2 \tR6 2.5.1 \taffyio 1.60.0 \trpart 4.1.16 \tHmisc 4.7.0 \tcolorspace 2.0.3 \tnnet 7.3.17 \tgridExtra 2.3 \tcompiler 4.0.5 \tMassSpecWavelet 1.56.0 \tpreprocessCore 1.52.1 \tgraph 1.68.0 \tcli 3.3.0 \thtmlTable 2.4.1 \tDelayedArray 0.16.3 \tscales 1.2.0 \tcheckmate 2.1.0 \tDEoptimR 1.0.11 \trobustbase 0.95.0 \taffy 1.68.0 \tRBGL 1.66.0 \tstringr 1.4.0 \tdigest 0.6.29 \tforeign 0.8.82 \tXVector 0.30.0 \tbase64enc 0.1.3 \tjpeg 0.1.9 \tpkgconfig 2.0.3 \thtmltools 0.5.2 \tMatrixGenerics 1.2.1 \tfastmap 1.1.0 \tlimma 3.46.0 \thtmlwidgets 1.5.4 \trlang 1.0.3 \trstudioapi 0.13 \timpute 1.64.0 \tmzID 1.28.0 \tRCurl 1.98.1.7 \tmagrittr 2.0.3 \tGenomeInfoDbData 1.2.4 \tFormula 1.2.4 \tinterp 1.1.2 \tMALDIquant 1.21 \tMatrix 1.4.1 \tmunsell 0.5.0 \tfansi 1.0.3 \tMsCoreUtils 1.2.0 \tlifecycle 1.0.1 \tvsn 3.58.0 \tstringi 1.7.6 \tMASS 7.3.57 \tSummarizedExperiment 1.20.0 \tzlibbioc 1.36.0 \tplyr 1.8.7 \tgrid 4.0.5 \tcrayon 1.5.1 \tdeldir 1.0.6 \tlattice 0.20.45 \tsplines 4.0.5 \tknitr 1.39 \tpillar 1.7.0 \tigraph 1.3.2 \tGenomicRanges 1.42.0 \tcodetools 0.2.18 \tXML 3.99.0.10 \tglue 1.6.2 \tlatticeExtra 0.6.30 \tdata.table 1.14.2 \tpcaMethods 1.82.0 \tBiocManager 1.30.18 \tpng 0.1.7 \tvctrs 0.4.1 \tforeach 1.5.2 \tgtable 0.3.0 \tRANN 2.6.1 \tggplot2 3.3.6 \txfun 0.31 \tncdf4 1.19 \tsurvival 3.3.1 \ttibble 3.1.7 \titerators 1.0.14 \tIRanges 2.24.1 \tcluster 2.1.3 \tellipsis 0.3.2 \t\n\n\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:23.554174"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/018a9771de28/xcms_summary//xcms_summary.r image '/galaxy/data/files/000/168/dataset_168688.dat' htmlOutput '/galaxy/data/files/000/171/dataset_171133.dat' user_email lain.pavot@inrae.fr", "create_time": "2022-07-11T08:48:08.723085", "encoded_id": "429d72fce85c7847", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"htmlOutput": ["6cfec59776d776f1"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/abims_xcms_summary/3.12.0+galaxy0", "tool_stderr": "", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \tCAMERA 1.46.0 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nbitops 1.0.7 \tmatrixStats 0.62.0 \tdoParallel 1.0.17 \tRColorBrewer 1.1.3 \tGenomeInfoDb 1.26.4 \ttools 4.0.5 \tbackports 1.4.1 \tutf8 1.2.2 \tR6 2.5.1 \taffyio 1.60.0 \trpart 4.1.16 \tHmisc 4.7.0 \tcolorspace 2.0.3 \tnnet 7.3.17 \tgridExtra 2.3 \tcompiler 4.0.5 \tMassSpecWavelet 1.56.0 \tpreprocessCore 1.52.1 \tgraph 1.68.0 \tcli 3.3.0 \thtmlTable 2.4.1 \tDelayedArray 0.16.3 \tscales 1.2.0 \tcheckmate 2.1.0 \tDEoptimR 1.0.11 \trobustbase 0.95.0 \taffy 1.68.0 \tRBGL 1.66.0 \tstringr 1.4.0 \tdigest 0.6.29 \tforeign 0.8.82 \tXVector 0.30.0 \tbase64enc 0.1.3 \tjpeg 0.1.9 \tpkgconfig 2.0.3 \thtmltools 0.5.2 \tMatrixGenerics 1.2.1 \tfastmap 1.1.0 \tlimma 3.46.0 \thtmlwidgets 1.5.4 \trlang 1.0.3 \trstudioapi 0.13 \timpute 1.64.0 \tmzID 1.28.0 \tRCurl 1.98.1.7 \tmagrittr 2.0.3 \tGenomeInfoDbData 1.2.4 \tFormula 1.2.4 \tinterp 1.1.2 \tMALDIquant 1.21 \tMatrix 1.4.1 \tmunsell 0.5.0 \tfansi 1.0.3 \tMsCoreUtils 1.2.0 \tlifecycle 1.0.1 \tvsn 3.58.0 \tstringi 1.7.6 \tMASS 7.3.57 \tSummarizedExperiment 1.20.0 \tzlibbioc 1.36.0 \tplyr 1.8.7 \tgrid 4.0.5 \tcrayon 1.5.1 \tdeldir 1.0.6 \tlattice 0.20.45 \tsplines 4.0.5 \tknitr 1.39 \tpillar 1.7.0 \tigraph 1.3.2 \tGenomicRanges 1.42.0 \tcodetools 0.2.18 \tXML 3.99.0.10 \tglue 1.6.2 \tlatticeExtra 0.6.30 \tdata.table 1.14.2 \tpcaMethods 1.82.0 \tBiocManager 1.30.18 \tpng 0.1.7 \tvctrs 0.4.1 \tforeach 1.5.2 \tgtable 0.3.0 \tRANN 2.6.1 \tggplot2 3.3.6 \txfun 0.31 \tncdf4 1.19 \tsurvival 3.3.1 \ttibble 3.1.7 \titerators 1.0.14 \tIRanges 2.24.1 \tcluster 2.1.3 \tellipsis 0.3.2 \t\n\n\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:26.976558"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/d45a786cbc40/xcms_group//xcms_group.r image '/galaxy/data/files/000/168/dataset_168688.dat' method PeakDensity bw 30.0 minFraction 0.5 minSamples 1 binSize 0.25 maxFeatures 50 ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:48:13.372323", "encoded_id": "b73b29d72339f964", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"plotChromPeakDensity": ["06ebb230e4130581"], "xsetRData": ["1658b7ac9d331229"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "methods": {"PeakDensityAdv": {"maxFeatures": "50"}, "__current_case__": 0, "binSize": "0.25", "bw": "30.0", "method": "PeakDensity", "minFraction": "0.5", "minSamples": "1"}, "peaklist": {"__current_case__": 1, "peaklistBool": "false"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nRColorBrewer 1.1.2 \tbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nmethod\tPeakDensity\nbw\t30\nminFraction\t0.5\nminSamples\t1\nbinSize\t0.25\nmaxFeatures\t50\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:28.924306"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/d45a786cbc40/xcms_group//xcms_group.r image '/galaxy/data/files/000/168/dataset_168688.dat' method PeakDensity bw 30.0 minFraction 0.5 minSamples 1 binSize 0.25 maxFeatures 50 ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:48:17.266516", "encoded_id": "a6797cd946448e7b", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"plotChromPeakDensity": ["e0158599f7882364"], "xsetRData": ["43325fb3d8f8d47a"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "methods": {"PeakDensityAdv": {"maxFeatures": "50"}, "__current_case__": 0, "binSize": "0.25", "bw": "30.0", "method": "PeakDensity", "minFraction": "0.5", "minSamples": "1"}, "peaklist": {"__current_case__": 1, "peaklistBool": "false"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nRColorBrewer 1.1.2 \tbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nmethod\tPeakDensity\nbw\t30\nminFraction\t0.5\nminSamples\t1\nbinSize\t0.25\nmaxFeatures\t50\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:32.972939"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/5bd125a3f3b0/xcms_merge//xcms_merge.r images 'c(\"/galaxy/data/files/000/168/dataset_168688.dat\")'", "create_time": "2022-07-11T08:48:20.879206", "encoded_id": "dd5dfaff7aba44a7", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"images": ["9e77b3d7d0887128"], "images1": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sampleMetadataOutput": ["6fcfeac7a64b0a10"], "xsetRData": ["d3d4ca6c84e2eb43"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "images": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "sampleMetadata": null}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.12.0+galaxy0", "tool_stderr": "Error in retrieveRawfileInTheWorkingDir(singlefile, zipfile, args) : \n Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\nCalls: mergeXData -> retrieveRawfileInTheWorkingDir\nExecution halted\n", "tool_stdout": "R version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tXSET MERGING...\n[1] \"Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\"\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:38.730743"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/94eb263cfab4/xcms_export_samplemetadata//xcms_export_samplemetadata.r images 'c(\"/galaxy/data/files/000/168/dataset_168688.dat\")'", "create_time": "2022-07-11T08:48:23.723080", "encoded_id": "082f78f4f8bdfcba", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"images": ["9e77b3d7d0887128"], "images1": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sampleMetadataOutput": ["1534a4f5ea43db6f"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "images": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "R version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:39.750641"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/024974037c4e/xcms_plot_chromatogram///xcms_plot_chromatogram.r images 'c(\"/galaxy/data/files/000/168/dataset_168688.dat\")'", "create_time": "2022-07-11T08:48:27.633357", "encoded_id": "9c5412bfb8d46d63", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"images": ["9e77b3d7d0887128"], "images1": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"bpisPdf": ["3892150f2fe222a4"], "ticsPdf": ["3b2ea3866be8e8e1"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "images": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "sampleMetadata": null}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy0", "tool_stderr": "Error in retrieveRawfileInTheWorkingDir(singlefile, zipfile, args) : \n Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\nCalls: mergeXData -> retrieveRawfileInTheWorkingDir\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nRColorBrewer 1.1.2 \tbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimages\t/galaxy/data/files/000/168/dataset_168688.dat\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n[1] \"Cannot access the sample: X20201203_ImjXseeker_70K_blk_01 located: /home/lpavot/Desktop/projects/xseeker/xseekerpreparator/convert/recreate_rdata_from_galaxy/X20201203_ImjXseeker_70K_blk_01.mzML . Please, contact your administrator ... if you have one!\"\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:42.897209"}, {"command_line": "LC_ALL=C Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/26d77e9ceb49/xcms_fillpeaks//xcms_fillpeaks.r image '/galaxy/data/files/000/168/dataset_168688.dat' expandMz 0 expandRt 0 ppm 0 convertRTMinute FALSE numDigitsMZ 4 numDigitsRT 0 intval into naTOzero TRUE ; return=$?; cat 'log.txt'; sh -c \"exit $return\"", "create_time": "2022-07-11T08:48:32.887979", "encoded_id": "ce42c7d545642e44", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"image": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix": ["03327c57c83dd5fa"], "variableMetadata": ["ed2870de67554863"], "xsetRData": ["a8104466e02ce60a"]}, "params": {"Adv": {"expandMz": "0", "expandRt": "0", "ppm": "0"}, "__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "file_load_section": {"file_load_conditional": {"__current_case__": 0, "file_load_select": "no"}}, "image": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}, "peaklist": {"convertRTMinute": "false", "intval": "into", "naTOzero": "true", "numDigitsMZ": "4", "numDigitsRT": "0", "peaklistBool": "True"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy0", "tool_stderr": "Error: \n\nERROR: The RData doesn't contain any object called 'xdata'. This RData should have been created by an old version of XMCS 2.*\nExecution halted\n", "tool_stdout": "\tSESSION INFO\nR version 4.0.5 (2021-03-31) \nMain packages:\nbatch 1.1.5 \txcms 3.12.0 \tMSnbase 2.16.1 \tProtGenerics 1.22.0 \tS4Vectors 0.28.1 \tmzR 2.24.1 \tRcpp 1.0.9 \tBiocParallel 1.24.1 \tBiobase 2.50.0 \tBiocGenerics 0.36.0 \t\nOther loaded packages:\nSummarizedExperiment 1.20.0 \tlattice 0.20.45 \tcolorspace 2.0.3 \tvctrs 0.4.1 \tvsn 3.58.0 \tutf8 1.2.2 \tXML 3.99.0.10 \trlang 1.0.3 \tpillar 1.7.0 \tglue 1.6.2 \taffy 1.68.0 \tRColorBrewer 1.1.2 \tGenomeInfoDbData 1.2.4 \taffyio 1.60.0 \tmatrixStats 0.62.0 \tforeach 1.5.2 \tlifecycle 1.0.1 \tplyr 1.8.7 \tmzID 1.28.0 \trobustbase 0.95.0 \tzlibbioc 1.36.0 \tMatrixGenerics 1.2.1 \tmunsell 0.5.0 \tpcaMethods 1.82.0 \tgtable 0.3.0 \tcodetools 0.2.18 \tIRanges 2.24.1 \tdoParallel 1.0.17 \tGenomeInfoDb 1.26.4 \tMassSpecWavelet 1.56.0 \tfansi 1.0.3 \tpreprocessCore 1.52.1 \tDEoptimR 1.0.11 \tscales 1.2.0 \tBiocManager 1.30.18 \tDelayedArray 0.16.3 \tlimma 3.46.0 \tXVector 0.30.0 \tMsCoreUtils 1.2.0 \tRANN 2.6.1 \timpute 1.64.0 \tggplot2 3.3.6 \tdigest 0.6.29 \tncdf4 1.19 \tGenomicRanges 1.42.0 \tgrid 4.0.5 \tcli 3.3.0 \ttools 4.0.5 \tbitops 1.0.7 \tmagrittr 2.0.3 \tRCurl 1.98.1.7 \ttibble 3.1.7 \tcrayon 1.5.1 \tpkgconfig 2.0.3 \tMatrix 1.4.1 \tMASS 7.3.57 \tellipsis 0.3.2 \titerators 1.0.14 \tR6 2.5.1 \tMALDIquant 1.21 \tcompiler 4.0.5 \t\n\n\n\tARGUMENTS INFO\nimage\t/galaxy/data/files/000/168/dataset_168688.dat\nexpandMz\t0\nexpandRt\t0\nppm\t0\nconvertRTMinute\tFALSE\nnumDigitsMZ\t4\nnumDigitsRT\t0\nintval\tinto\nnaTOzero\tTRUE\n\n\n\tARGUMENTS PROCESSING INFO\n\n\n\tINFILE PROCESSING INFO\n", "tool_version": "3.12.0+galaxy0", "traceback": null, "update_time": "2022-07-11T08:48:49.734335"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/acdf51018708/qualitymetrics/qualitymetrics_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168731.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" CV \"FALSE\" Compa \"TRUE\" seuil \"1\" poolAsPool1L \"TRUE\" sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171146.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171147.dat\" figure \"/galaxy/data/files/000/171/dataset_171148.dat\" information \"/galaxy/data/files/000/171/dataset_171149.dat\"", "create_time": "2022-07-11T08:49:28.924395", "encoded_id": "ee77bb429c7c9f1d", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["7cf499d16bd542b2"], "sampleMetadata_in": ["7cf499d16bd542b2"], "variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["b4994b74e8d48b37"], "information": ["ec66019a424ab8c8"], "sampleMetadata_out": ["1acf05259078d9af"], "variableMetadata_out": ["62cb370746be8776"]}, "params": {"CV_condition": {"CV": "FALSE", "Compa": "TRUE", "__current_case__": 1, "seuil": "1"}, "__input_ext": "tabular", "advPar": {"__current_case__": 1, "optC": "default", "poolAsPool1L": "TRUE"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "sampleMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n The following identifiers found in the data matrix\n do not appear in the sample metadata file:\n mz\n rt\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 2-diethylamino-6-methyl pyrimidin-4-ol one\n 5-hydroxy-thiabendazole\n acetamiprid-N-desmethyl\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: QualityControl -> check.err\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.8", "traceback": null, "update_time": "2022-07-11T08:49:35.687780"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/49c36c54e0cf/intensity_checks/Intchecks/wrapper_intensity_check.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"no_class\" chosen_stat \"None\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171150.dat\" graphs_out \"/galaxy/data/files/000/171/dataset_171151.dat\"", "create_time": "2022-07-11T08:49:38.287192", "encoded_id": "212186a890314bf8", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"graphs_out": ["8db230ba7dcb6989"], "variableMetadata_out": ["2e64ae6c81ea53d4"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "method_cond": {"__current_case__": 0, "chosen_stat": null, "method": "no_class"}, "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/intens_check/1.2.8", "tool_stderr": "Error: \n- - - - - - - - -\nYou did not select any computational option. Program can not be executed.\n- - - - - - - - -\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:49:49 \n\n-------------------------------------------------------------------- \nIntensity Check parameters:\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$variableMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$method\n[1] \"no_class\"\n\n$chosen_stat\n[1] \"None\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171150.dat\"\n\n$graphs_out\n[1] \"/galaxy/data/files/000/171/dataset_171151.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "1.2.8", "traceback": null, "update_time": "2022-07-11T08:49:53.973761"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl -f \"/galaxy/data/files/000/168/dataset_168729.dat\" -m \"/galaxy/data/files/000/168/dataset_168729.dat\" -o 2 -d \"/galaxy/data/files/000/168/dataset_168729.dat\" -v \"/galaxy/data/files/000/168/dataset_168729.dat\" -rt \"0.1\" -mass \"0.005\" -r \"intensity\" -correl \"0.9\" -output_sif \"/galaxy/data/files/000/171/dataset_171152.dat\" -output_tabular \"/galaxy/data/files/000/171/dataset_171153.dat\"", "create_time": "2022-07-11T08:49:47.034504", "encoded_id": "ab8e2e26fd4e70b4", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "file_in": ["9a0ce47bd1734ae7"], "mass_file|mass_file_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sif_out": ["92626a4def3a6ddc"], "variableMetadata_out": ["4c8d2eafb9372cfc"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "correl_threshold": "0.9", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "file_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "mass_file": {"__current_case__": 0, "liste": {"__current_case__": 1, "mass_file_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "mass_list": "true"}, "mass_choice": "true", "mass_threshold": "0.005"}, "repres_opt": {"__current_case__": 1, "repres_opt_selector": "intensity"}, "rt_cond": {"__current_case__": 0, "rt_choice": "true", "rt_threshold": "0.1"}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/acorf/Analytic_correlation_filtration/2019-06-20", "tool_stderr": "Use of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 2.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 3.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 4.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 5.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 6.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 7.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 8.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 9.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 10.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 11.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 12.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 13.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 14.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 15.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 16.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 17.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 18.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 19.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 20.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 21.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 22.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 23.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 24.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 25.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 26.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 27.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 28.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 29.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 30.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 31.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at 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105, <F5> line 36.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 37.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 38.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 39.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 40.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at 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105, <F5> line 45.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 46.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 47.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 48.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 49.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at 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105, <F5> line 54.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 55.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 56.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 57.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 58.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at 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105, <F5> line 63.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 64.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 65.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 66.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 67.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at 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105, <F5> line 72.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 73.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 74.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 75.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 76.\nUse of uninitialized value $hheader_line{\"rt\"} in array element at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/lib/IonFiltration.pm line 105, <F5> line 77.\nUse of uninitialized value $hheader_line{\"rt\"} in \n..\nline 113, <F1> line 1045.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1045.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1046.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1046.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1047.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1047.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1048.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1048.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1049.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1049.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1050.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1050.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1051.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1051.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1052.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1052.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1053.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1053.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1054.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1054.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1055.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1055.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1056.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1056.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1057.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1057.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1058.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1058.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1059.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1059.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1060.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1060.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1061.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1061.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1062.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1062.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1063.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1063.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1064.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1064.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1065.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1065.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1066.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1066.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1067.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1067.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1068.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1068.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1069.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1069.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1070.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1070.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1071.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1071.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1072.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1072.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1073.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1073.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1074.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1074.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1075.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1075.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1076.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1076.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1077.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1077.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1078.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1078.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1079.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1079.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1080.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1080.\nUse of uninitialized value $bmass in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 113, <F1> line 1081.\nArgument \"precursorScanNum\" isn't numeric in subtraction (-) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/acorf/15430e89c97d/acorf/ACF/Analytic_correlation_filtration.pl line 148, <F1> line 1081.\n", "tool_stdout": "The mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 322 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 326 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 328 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 330 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 332 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 334 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 336 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4260 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4264 !\nThe mass difference already exists : 4268 !\nThe mass difference alrea\n..\nady exists : 5834 !\nThe mass difference already exists : 5834 !\nThe mass difference already exists : 5834 !\nThe mass difference already exists : 5834 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3587 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3590 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3593 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3596 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3602 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3938 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3944 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3950 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3956 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 3968 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6148 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6154 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6160 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6166 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6172 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nThe mass difference already exists : 6178 !\nCr\u00e9ation of a hash containing all adduits and fragments possible\nCreation of a sif table + correlation filtration done\nAnalytic correlation filtrering follow options done\nJoin groups that have been subdivided done\nAddition of annotation information among groups done\nChoose the representative ion for each group done\nAddition of annotation information relative to the representative ion done\nPrint in result file done\nAll steps done\n", "tool_version": "2019-06-20", "traceback": null, "update_time": "2022-07-11T08:49:58.551131"}, {"command_line": "Rscript '/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/workflow4metabolomics/correlation_analysis/58997c28b268/correlation_analysis/correlation_analysis.r' sorting 1 variable_metadata '/galaxy/data/files/000/168/dataset_168731.dat' data_matrix '/galaxy/data/files/000/168/dataset_168731.dat' sample_metadata '/galaxy/data/files/000/168/dataset_168731.dat' corrdel 0 param_correlation \"\" param_cytoscape \"\" matrix_corr 0 user_matrix_corr \"\" corr_method \"\"", "create_time": "2022-07-11T08:50:10.948083", "encoded_id": "0b0fc8d1b535b635", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["7cf499d16bd542b2"], "sampleMetadata": ["7cf499d16bd542b2"], "variableMetadata": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"sorted_table": ["a7dc208e4eb7b2f7"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "cond_input_type": {"__current_case__": 0, "cond_function": {"__current_case__": 0, "select_funtion": "sort_only"}, "dataMatrix": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "sampleMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "select_input_type": "select_input_from_w4m", "variableMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "dbkey": "?"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/workflow4metabolomics/correlation_analysis/correlation_analysis/1.0.1+galaxy0", "tool_stderr": "Error in `[.data.frame`(new_input, \"pcgroup\") : \n undefined columns selected\nCalls: do.call ... sorting -> cbind -> cbind -> data.frame -> [ -> [.data.frame\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:50:22 \n\n-------------------------------------------------------------------- \nParameters used in 'Metabolites Correlation Analysis':\n\n$sorting\n[1] 1\n\n$variable_metadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$data_matrix\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sample_metadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$corrdel\n[1] 0\n\n$param_correlation\n[1] \"\"\n\n$param_cytoscape\n[1] \"\"\n\n$matrix_corr\n[1] 0\n\n$user_matrix_corr\n[1] \"\"\n\n$corr_method\n[1] \"\"\n\n--------------------------------------------------------------------\n\n\nExecuting the sorting function\n", "tool_version": "1.0.1+galaxy0", "traceback": null, "update_time": "2022-07-11T08:50:27.096987"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/transformation/0ccfc3e15710/transformation/transformation_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"log2\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171155.dat\" information \"/galaxy/data/files/000/171/dataset_171156.dat\"", "create_time": "2022-07-11T08:50:17.005606", "encoded_id": "a76ddfe9cc0832fc", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["87ebb5861861a6c6"], "information": ["e82d31b63bfcce14"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "method": "log2"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/transformation/Transformation/2.2.0", "tool_stderr": "Error in read.table(argVc[[\"dataMatrix_in\"]], check.names = FALSE, header = TRUE, : \n duplicate 'row.names' are not allowed\nCalls: t -> as.matrix -> read.table\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.0", "traceback": null, "update_time": "2022-07-11T08:50:39.454200"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/normalization/221cbd549c40/normalization/NmrNormalization_wrapper.R dataMatrix /galaxy/data/files/000/168/dataset_168729.dat scalingMethod None graphType None logOut /galaxy/data/files/000/171/dataset_171157.dat dataMatrixOut /galaxy/data/files/000/171/dataset_171158.dat graphOut XXXX", "create_time": "2022-07-11T08:50:20.930379", "encoded_id": "6fdf81221074c427", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrixOut": ["648f2f60b1d3703b"], "logOut": ["06a085d607e91aa1"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "graphType": "None", "scalingMethod": {"__current_case__": 0, "method": "None"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/normalization/normalization/1.0.7", "tool_stderr": "Error in read.table(argLs[[\"dataMatrix\"]], check.names = FALSE, header = TRUE, : \n duplicate 'row.names' are not allowed\nExecution halted\n", "tool_stdout": "", "tool_version": "1.0.7", "traceback": null, "update_time": "2022-07-11T08:50:38.987078"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"determine_bc\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" ref_factor \"batch\" span \"none\" out_graph_pdf \"/galaxy/data/files/000/171/dataset_171159.dat\" out_preNormSummary \"/galaxy/data/files/000/171/dataset_171160.dat\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:50:25.663044", "encoded_id": "4fefeddf7f518267", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"out_graph_pdf": ["705c8448e3da51ac"], "out_preNormSummary": ["223f8486bbcbff21"]}, "params": {"__input_ext": "tabular", "advance": {"__current_case__": 1, "option": "hide"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "ref_factor": "batch", "sampleMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Determine_BC/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:50:37 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"determine_bc\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$ref_factor\n[1] \"batch\"\n\n$span\n[1] \"none\"\n\n$out_graph_pdf\n[1] \"/galaxy/data/files/000/171/dataset_171159.dat\"\n\n$out_preNormSummary\n[1] \"/galaxy/data/files/000/171/dataset_171160.dat\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:50:47.176008"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"batch_correction\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"linear\" span \"none\" valnull \"none\" ref_factor \"batch\" detail \"no\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171161.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171162.dat\" graph_output \"/galaxy/data/files/000/171/dataset_171163.dat\" rdata_output \"XXXX\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:50:32.133479", "encoded_id": "ab33fc55ef4e6ef3", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["9a0ce47bd1734ae7"], "variableMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 127 ()", "error_level": 3, "exit_code": 127, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["9aa8d81dc8bcf907"], "graph_output": ["ec9fccd9398c4918"], "variableMetadata_out": ["f3da5e47224170ed"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}, "span_condition": {"__current_case__": 0, "detail": "no", "method": "linear", "ref_factor": "batch", "valnull": "none"}, "variableMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0", "tool_stderr": "/galaxy/data/jobs_directory/089/89454/tool_script.sh: line 77: Rscript: command not found\n", "tool_stdout": "", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:50:37.846452"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"batch_correction\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"linear\" span \"none\" valnull \"none\" ref_factor \"batch\" detail \"no\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171164.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171165.dat\" graph_output \"/galaxy/data/files/000/171/dataset_171166.dat\" rdata_output \"XXXX\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:52:12.304732", "encoded_id": "56c0d8e6c86a1764", "exit_code": 127, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["9a0ce47bd1734ae7"], "variableMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 127 ()", "error_level": 3, "exit_code": 127, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["d6d2a48066758eba"], "graph_output": ["3bddab42140681a3"], "variableMetadata_out": ["291fd64ff7d8ccd4"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}, "span_condition": {"__current_case__": 0, "detail": "no", "method": "linear", "ref_factor": "batch", "valnull": "none"}, "variableMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0", "tool_stderr": "/galaxy/data/jobs_directory/089/89455/tool_script.sh: line 77: Rscript: command not found\n", "tool_stdout": "", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:52:17.936045"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"batch_correction\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" method \"linear\" span \"none\" valnull \"none\" ref_factor \"batch\" detail \"no\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171167.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171168.dat\" graph_output \"/galaxy/data/files/000/171/dataset_171169.dat\" rdata_output \"XXXX\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:52:40.679133", "encoded_id": "3f9d30066f6a43a5", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["9a0ce47bd1734ae7"], "variableMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["717c674a3dc82438"], "graph_output": ["e41cbff630693073"], "variableMetadata_out": ["82b59b7aa276ad0d"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}, "span_condition": {"__current_case__": 0, "detail": "no", "method": "linear", "ref_factor": "batch", "valnull": "none"}, "variableMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:52:52 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"batch_correction\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$variableMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$method\n[1] \"linear\"\n\n$span\n[1] \"none\"\n\n$valnull\n[1] \"none\"\n\n$ref_factor\n[1] \"batch\"\n\n$detail\n[1] \"no\"\n\n$dataMatrix_out\n[1] \"/galaxy/data/files/000/171/dataset_171167.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171168.dat\"\n\n$graph_output\n[1] \"/galaxy/data/files/000/171/dataset_171169.dat\"\n\n$rdata_output\n[1] \"XXXX\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:53:00.928692"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"determine_bc\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168731.dat\" dataMatrix \"/galaxy/data/files/000/168/dataset_168731.dat\" ref_factor \"batch\" span \"none\" out_graph_pdf \"/galaxy/data/files/000/171/dataset_171170.dat\" out_preNormSummary \"/galaxy/data/files/000/171/dataset_171171.dat\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:53:11.477121", "encoded_id": "ca492c7005ee175e", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["7cf499d16bd542b2"], "sampleMetadata": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"out_graph_pdf": ["70c41105a71d6c96"], "out_preNormSummary": ["01b10cdd9064a60a"]}, "params": {"__input_ext": "tabular", "advance": {"__current_case__": 1, "option": "hide"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "ref_factor": "batch", "sampleMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Determine_BC/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n The following identifiers found in the data matrix\n do not appear in the sample metadata file:\n mz\n rt\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 2-diethylamino-6-methyl pyrimidin-4-ol one\n 5-hydroxy-thiabendazole\n acetamiprid-N-desmethyl\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:53:12 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"determine_bc\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$ref_factor\n[1] \"batch\"\n\n$span\n[1] \"none\"\n\n$out_graph_pdf\n[1] \"/galaxy/data/files/000/171/dataset_171170.dat\"\n\n$out_preNormSummary\n[1] \"/galaxy/data/files/000/171/dataset_171171.dat\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:53:16.973567"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"batch_correction\" dataMatrix \"/galaxy/data/files/000/168/dataset_168731.dat\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168731.dat\" variableMetadata \"/galaxy/data/files/000/168/dataset_168731.dat\" method \"linear\" span \"none\" valnull \"none\" ref_factor \"batch\" detail \"no\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171172.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171173.dat\" graph_output \"/galaxy/data/files/000/171/dataset_171174.dat\" rdata_output \"XXXX\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:54:20.507678", "encoded_id": "f514e5f531b51ecd", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["7cf499d16bd542b2"], "sampleMetadata": ["7cf499d16bd542b2"], "variableMetadata": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["5035859f64c2f04f"], "graph_output": ["de47ad8552edec91"], "variableMetadata_out": ["c44fb0b01495f2a0"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "sampleMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}, "span_condition": {"__current_case__": 0, "detail": "no", "method": "linear", "ref_factor": "batch", "valnull": "none"}, "variableMetadata": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n The following identifiers found in the data matrix\n do not appear in the sample metadata file:\n mz\n rt\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 2-diethylamino-6-methyl pyrimidin-4-ol one\n 5-hydroxy-thiabendazole\n acetamiprid-N-desmethyl\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:54:21 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"batch_correction\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$variableMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$method\n[1] \"linear\"\n\n$span\n[1] \"none\"\n\n$valnull\n[1] \"none\"\n\n$ref_factor\n[1] \"batch\"\n\n$detail\n[1] \"no\"\n\n$dataMatrix_out\n[1] \"/galaxy/data/files/000/171/dataset_171172.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171173.dat\"\n\n$graph_output\n[1] \"/galaxy/data/files/000/171/dataset_171174.dat\"\n\n$rdata_output\n[1] \"XXXX\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:54:26.051507"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/23314e1192d4/batchcorrection/BC/batch_correction_3Lwrapper.R analyse \"determine_bc\" sampleMetadata \"/galaxy/data/files/000/168/dataset_168729.dat\" dataMatrix \"/galaxy/data/files/000/168/dataset_168729.dat\" ref_factor \"batch\" span \"none\" out_graph_pdf \"/galaxy/data/files/000/171/dataset_171175.dat\" out_preNormSummary \"/galaxy/data/files/000/171/dataset_171176.dat\" batch_col_name \"batch\" injection_order_col_name \"injectionOrder\" sample_type_col_name \"sampleType\" sample_type_tags \"blank=blank,pool=pool,sample=sample\"", "create_time": "2022-07-11T08:54:26.136121", "encoded_id": "4b386b475561332d", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix": ["9a0ce47bd1734ae7"], "sampleMetadata": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"out_graph_pdf": ["feb6b28c817c88e1"], "out_preNormSummary": ["4c3421ed8791b2ee"]}, "params": {"__input_ext": "tabular", "advance": {"__current_case__": 1, "option": "hide"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "ref_factor": "batch", "sampleMetadata": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "smcust": {"batch_col_name": "batch", "injection_order_col_name": "injectionOrder", "sampleTypeTagBlank": "blank", "sampleTypeTagPool": "pool", "sampleTypeTagSample": "sample", "sample_type_col_name": "sampleType"}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Determine_BC/3.0.0", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: meth3L -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:54:27 \n\n-------------------------------------------------------------------- \nParameters used:\n\n$analyse\n[1] \"determine_bc\"\n\n$sampleMetadata\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$dataMatrix\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$ref_factor\n[1] \"batch\"\n\n$span\n[1] \"none\"\n\n$out_graph_pdf\n[1] \"/galaxy/data/files/000/171/dataset_171175.dat\"\n\n$out_preNormSummary\n[1] \"/galaxy/data/files/000/171/dataset_171176.dat\"\n\n$batch_col_name\n[1] \"batch\"\n\n$injection_order_col_name\n[1] \"injectionOrder\"\n\n$sample_type_col_name\n[1] \"sampleType\"\n\n$sample_type_tags\n[1] \"blank=blank,pool=pool,sample=sample\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "3.0.0", "traceback": null, "update_time": "2022-07-11T08:54:35.428642"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/29ec7e3afdd4/corr_table/CorrTable/Corr_wrap.r tab1_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab2_in \"/galaxy/data/files/000/168/dataset_168731.dat\" tab1_samples \"row\" tab2_samples \"row\" corr_method \"pearson\" test_corr \"no\" filter \"no\" reorder_var \"no\" plot_choice \"auto\" color_heatmap \"no\" tabcorr_out \"/galaxy/data/files/000/171/dataset_171177.dat\" heatmap_out \"/galaxy/data/files/000/171/dataset_171178.dat\"", "create_time": "2022-07-11T08:54:55.601461", "encoded_id": "8e6116b8d2af6164", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"tab1_in": ["7cf499d16bd542b2"], "tab2_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"heatmap_out": ["13b522f310900ee9"], "tabcorr_out": ["d18e96b689cbc930"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "corr_method": "pearson", "dbkey": "?", "filter_section": {"filter_cond": {"__current_case__": 1, "filter": "no"}, "testcorr_cond": {"__current_case__": 1, "test_corr": "no"}}, "out_section": {"plot_cond": {"__current_case__": 0, "heatmap_cond": {"__current_case__": 1, "color_heatmap": "no"}, "plot_choice": "auto"}, "reorder_var": "no"}, "tab1_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab1_samples": "row", "tab2_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tab2_samples": "row"}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/corrtable/1.0.0", "tool_stderr": "", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:54:57 \n\n-------------------------------------------------------------------- \nParameters used in \"Between-table Correlation\":\n\n$tab1_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$tab2_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$tab1_samples\n[1] \"row\"\n\n$tab2_samples\n[1] \"row\"\n\n$corr_method\n[1] \"pearson\"\n\n$test_corr\n[1] \"no\"\n\n$filter\n[1] \"no\"\n\n$reorder_var\n[1] \"no\"\n\n$plot_choice\n[1] \"auto\"\n\n$color_heatmap\n[1] \"no\"\n\n$tabcorr_out\n[1] \"/galaxy/data/files/000/171/dataset_171177.dat\"\n\n$heatmap_out\n[1] \"/galaxy/data/files/000/171/dataset_171178.dat\"\n\n--------------------------------------------------------------------\n\n\n- - - - - - - - -\n \nYou chose the same table for the two dataset inputs. \nTo allow filtering options, we will turn the diagonal to 0 in the correlation matrix during the filtering process.\n \n- - - - - - - - -\n\n\n-------------------------------------------------------------------- \nInformation about R (version, Operating System, attached or loaded packages):\n\nR version 3.5.1 (2018-07-02)\nPlatform: x86_64-conda_cos6-linux-gnu (64-bit)\nRunning under: Ubuntu 22.04 LTS\n\nMatrix products: default\nBLAS/LAPACK: /galaxy/server/database/dependencies/_conda/envs/mulled-v1-4613fcf00add6493ff827811a0604164f098e89a7dfa25ad5882ce915c8d5c89/lib/R/lib/libRlapack.so\n\nlocale:\n [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C \n [4] LC_COLLATE=C LC_MONETARY=C LC_MESSAGES=C \n [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C \n[10] LC_TELEPHONE=C LC_MEASUREMENT=C LC_IDENTIFICATION=C\n\nattached base packages:\n[1] stats graphics grDevices utils datasets methods base \n\nother attached packages:\n[1] reshape2_1.4.3 ggplot2_3.0.0 batch_1.1-4 \n\nloaded via a namespace (and not attached):\n [1] Rcpp_1.0.4.6 digest_0.6.25 withr_2.2.0 crayon_1.3.4 \n [5] grid_3.5.1 R6_2.4.1 plyr_1.8.6 lifecycle_0.2.0 \n [9] gtable_0.3.0 magrittr_1.5 scales_1.1.0 pillar_1.4.3 \n[13] stringi_1.4.6 rlang_0.4.5 farver_2.0.3 lazyeval_0.2.2 \n[17] vctrs_0.2.4 ellipsis_0.3.0 labeling_0.3 tools_3.5.1 \n[21] stringr_1.4.0 munsell_0.5.0 compiler_3.5.1 pkgconfig_2.0.3 \n[25] colorspace_1.4-1 tibble_3.0.1 \n--------------------------------------------------------------------\n \nJob ending time:\n Mon 11 Jul 2022 08:55:00", "tool_version": "1.0.0", "traceback": null, "update_time": "2022-07-11T08:55:04.048044"}, {"command_line": "Rscript /galaxy/server/tools/multivariate/multivariate.R --dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" --sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" --variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" --response_component \"1\" --predictive_component_number \"NA\" --orthogonal_component_number \"0\" --test_sample \"FALSE\" --graphic_type \"summary\" --color_parameter \"None\" --magnify_text \"0.8\" --abcissa_parameter \"1\" --ordinate_parameter \"2\" --ellipsis_component \"NA\" --labels_parameter \"None\" --algorithm \"default\" --cross_validation_number \"7\" --log10L \"FALSE\" --permutation_number \"20\" --scaling \"standard\" --sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171179.dat\" --variableMetadata_out \"/galaxy/data/files/000/171/dataset_171180.dat\" --figure \"/galaxy/data/files/000/171/dataset_171181.dat\" --information \"/galaxy/data/files/000/171/dataset_171182.dat\"", "create_time": "2022-07-11T08:55:02.906475", "encoded_id": "229f5c7cde6eed4a", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["e643ab2ce5e3f927"], "information": ["6cb86ed7e8dbb4f7"], "sampleMetadata_out": ["3d934f0f525fc6d5"], "variableMetadata_out": ["32457860c3cc7dd4"]}, "params": {"__input_ext": "input", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "compute": {"algorithm": "default", "cross_validation_number": "7", "log10L": "FALSE", "permutation_number": "20", "scaling": "standard"}, "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "graphics": {"abcissa_parameter": "1", "color_parameter": null, "ellipsis_component": "NA", "graphic_type": "summary", "labels_parameter": null, "magnify_text": "0.8", "ordinate_parameter": "2"}, "orthogonal_component_number": "0", "predictive_component_number": "NA", "response_component": "1", "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "save_rdata": "false", "test_sample": "FALSE", "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "Multivariate", "tool_stderr": "Error in read.table(parameters$dataMatrix_in, check.names = FALSE, header = TRUE, : \n duplicate 'row.names' are not allowed\nCalls: t -> as.matrix -> read.table\nExecution halted\n", "tool_stdout": "$help\n[1] FALSE\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$variableMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171179.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171180.dat\"\n\n$figure\n[1] \"/galaxy/data/files/000/171/dataset_171181.dat\"\n\n$information\n[1] \"/galaxy/data/files/000/171/dataset_171182.dat\"\n\n$test_sample\n[1] FALSE\n\n$abcissa_parameter\n[1] 1\n\n$ordinate_parameter\n[1] 2\n\n$color_parameter\n[1] \"None\"\n\n$ellipsis_component\n[1] \"NA\"\n\n$labels_parameter\n[1] \"None\"\n\n$response_component\n[1] 1\n\n$magnify_text\n[1] 0.8\n\n$predictive_component_number\n[1] \"NA\"\n\n$orthogonal_component_number\n[1] 0\n\n$cross_validation_number\n[1] 7\n\n$log10L\n[1] FALSE\n\n$permutation_number\n[1] 20\n\n$algorithm\n[1] \"default\"\n\n$graphic_type\n[1] \"summary\"\n\n$scaling\n[1] \"standard\"\n\n", "tool_version": "2.4.0", "traceback": null, "update_time": "2022-07-11T08:55:20.792963"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/biosigner/fa80bd02055f/biosigner/biosigner_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" respC \"\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171183.dat\" figure_tier \"/galaxy/data/files/000/171/dataset_171184.dat\" figure_boxplot \"/galaxy/data/files/000/171/dataset_171185.dat\" information \"/galaxy/data/files/000/171/dataset_171186.dat\"", "create_time": "2022-07-11T08:55:08.804048", "encoded_id": "1a3fc71f7e426427", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure_boxplot": ["ca2002853acbb064"], "figure_tier": ["5fbfc6ca7afbdb07"], "information": ["b1c4587dfe17688f"], "variableMetadata_out": ["dfe1c8c3a14ed3fb"]}, "params": {"__input_ext": "tabular", "advCpt": {"__current_case__": 0, "opcC": "default"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "respC": "", "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/biosigner/biosigner/2.2.7", "tool_stderr": "Error in h(simpleError(msg, call)) : \n error in evaluating the argument 'x' in selecting a method for function 't': duplicate 'row.names' are not allowed\nCalls: t -> as.matrix -> read.table\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.7", "traceback": null, "update_time": "2022-07-11T08:55:29.542243"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/3017385625f6/univariate/univariate_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168731.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" facC \"\" tesC \"ttest\" adjC \"fdr\" thrN \"0.05\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171187.dat\" figure \"/galaxy/data/files/000/171/dataset_171188.dat\" information \"/galaxy/data/files/000/171/dataset_171189.dat\"", "create_time": "2022-07-11T08:55:35.386766", "encoded_id": "01f1a014f517267b", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["7cf499d16bd542b2"], "sampleMetadata_in": ["7cf499d16bd542b2"], "variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["f1ee1179b7d81811"], "information": ["49fffafcc87c982f"], "variableMetadata_out": ["a4b5eda1a6930d5a"]}, "params": {"__input_ext": "tabular", "adjC": "fdr", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "dbkey": "?", "facC": "", "sampleMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "tesC": "ttest", "thrN": "0.05", "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4", "tool_stderr": "Error: Column names of the dataMatrix are not identical to the row names of the sampleMetadata; check your data with the 'Check Format' module in the 'Quality Control' section\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.4", "traceback": null, "update_time": "2022-07-11T08:55:51.341644"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/lecorguille/anova/102049093b7d/anova/abims_anova.r file '/galaxy/data/files/000/168/dataset_168729.dat' sampleinfo '/galaxy/data/files/000/168/dataset_168729.dat' varinfo '/galaxy/data/files/000/168/dataset_168729.dat' mode 'row' condition \"c('' )\" interaction F method none threshold 0.01 selection_method intersection sep 'tabulation' dec '.' outputdatapvalue '/galaxy/data/files/000/171/dataset_171190.dat' outputdatasignif '/galaxy/data/files/000/171/dataset_171191.dat'", "create_time": "2022-07-11T08:55:44.270729", "encoded_id": "7dd64083fb4cb0a0", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"input": ["9a0ce47bd1734ae7"], "sampleinfo": ["9a0ce47bd1734ae7"], "varinfo": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataSignif": ["fd6c123d85d5c88c"], "varMetaPValue": ["fdf275d80f342804"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "condition_1": "", "conditions": [], "dbkey": "?", "dec": ".", "input": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "interaction": "false", "method": "none", "mode": "row", "sampleinfo": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "selection_method": "intersection", "sep": "tabulation", "threshold": "0.01", "varinfo": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/lecorguille/anova/abims_anova/1.2.1", "tool_stderr": "Error in read.table(file, header = TRUE, row.names = 1, sep = sep, quote = \"\\\"\", : \n duplicate 'row.names' are not allowed\nCalls: do.call -> <Anonymous> -> read.table\nExecution halted\n", "tool_stdout": "ANOVA\n\nArguments\n [1] \"file\" \n [2] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n [3] \"sampleinfo\" \n [4] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n [5] \"varinfo\" \n [6] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n [7] \"mode\" \n [8] \"row\" \n [9] \"condition\" \n[10] \"c('' )\" \n[11] \"interaction\" \n[12] \"F\" \n[13] \"method\" \n[14] \"none\" \n[15] \"threshold\" \n[16] \"0.01\" \n[17] \"selection_method\" \n[18] \"intersection\" \n[19] \"sep\" \n[20] \"tabulation\" \n[21] \"dec\" \n[22] \".\" \n[23] \"outputdatapvalue\" \n[24] \"/galaxy/data/files/000/171/dataset_171190.dat\"\n[25] \"outputdatasignif\" \n[26] \"/galaxy/data/files/000/171/dataset_171191.dat\"\n", "tool_version": "1.2.1", "traceback": null, "update_time": "2022-07-11T08:56:00.841399"}, {"command_line": "perl /galaxy/server/tools/hmdb/1.7.2/wsdl_hmdb.pl -masses \"/galaxy/data/files/000/168/dataset_168731.dat\" -header_choice \"yes\" -nblineheader \"1\" -colfactor \"1\" -output_tabular \"/galaxy/data/files/000/171/dataset_171192.dat\" -output_html \"/galaxy/data/files/000/171/dataset_171193.dat\" -output_xlsx \"/galaxy/data/files/000/171/dataset_171194.dat\" -mode \"neutral\" -adduct_type \"M\" -delta \"0.05\" -maxquery \"10\" -advancedFeatures \"0\" -verbose \"1\"", "create_time": "2022-07-11T08:56:27.561908", "encoded_id": "6aba90e30136eba8", "exit_code": 255, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"masses": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"HmdbOutWeb": ["d5307cd15c435fcb"], "HmdbOutXlsx": ["1a4b8ebf08df6a10"], "variableMetadata": ["b76811ec1656e435"]}, "params": {"__input_ext": "tabular", "advancedFeatures": "0", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "delta": "0.05", "input_type": {"__current_case__": 0, "choice": "YES", "colfactor": "1", "header": {"__current_case__": 0, "header_choice": "yes", "nbHeader": "1"}, "masses": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}}, "maxquery": "10", "mode_type": {"__current_case__": 2, "data_neutral_adducts": ["M"], "mode": "neutral"}, "verbose": "1"}, "state": "ok", "tool_id": "wsdl_hmdb", "tool_stderr": "Error GETing https://hmdb.ca/spectra/ms/generate_csv.csv?results%5Baction%5D=search&results%5Badduct_type%5D%5B%5D=M&results%5Bccs_predictors%5D=&results%5Bccs_tolerance%5D=&results%5Bcommit%5D=Search&results%5Bcontroller%5D=specdb%2Fms&results%5Bms_search_ion_mode%5D=neutral&results%5Bquery_masses%5D=2-diethylamino-6-methyl%20pyrimidin-4-ol%20one%0D%0A5-hydroxy-thiabendazole%0D%0Aacetamiprid-N-desmethyl%0D%0AAcetochlor%0D%0AAvermectin%20B1a%20(Abamectin)%0D%0A&results%5Btolerance%5D=0.05&results%5Btolerance_units%5D=Da&results%5Butf8%5D=%E2%9C%93: Internal Server Error at /galaxy/server/tools/hmdb/1.7.2/lib/hmdb.pm line 649.\n", "tool_stdout": "\tTesting HMDB server connexion (1 time(s) )...\nStatus: 200\tThe HMDB server returns that your request (connexion test) was fulfilled\n\tAll searches should be sent successfully to HMDB...(Set verbose to \"High\" for more information!)\n", "tool_version": "1.7.2", "traceback": null, "update_time": "2022-07-11T08:56:36.878584"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bank_inhouse/52798007c6b2/bank_inhouse/bank_inhouse.pl -input \"/galaxy/data/files/000/171/dataset_171194.dat\" -nbheader \"1\" -colmass \"1\" -colrt \"1\" -rt_delta \"0.1\" -mz_delta \"Da\" -mass_delta \"0.005\" -bank_in \"/galaxy/data/files/000/171/dataset_171194.dat\" -bank_name \"compounds_p.HMDB_XLS.txt\" -mzdb \"1\" -rtdb \"1\" -outputTab \"/galaxy/data/files/000/171/dataset_171195.dat\" -outputXls \"/galaxy/data/files/000/171/dataset_171196.dat\"", "create_time": "2022-07-11T08:56:32.104917", "encoded_id": "3ddc4daa5b471511", "exit_code": 255, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"bank_in": ["1a4b8ebf08df6a10"], "variableMetadata_in": ["1a4b8ebf08df6a10"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"bankInhouseResXls_filein": ["01ac0a8751d9c247"], "variableMetadata_out": ["b688fce8e466a80a"]}, "params": {"__input_ext": "tabular", "bank_type": {"__current_case__": 0, "bank_in": {"values": [{"id": "1a4b8ebf08df6a10", "src": "hda"}]}, "bank_rt": {"__current_case__": 0, "bank_rt_choice": "true", "rtdb": "1"}, "mzdb": "1", "perso_bank": "true"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "input_type": {"__current_case__": 0, "choice": "YES", "colmass": "1", "header": {"__current_case__": 0, "header_choice": "true", "nbheader": "1"}, "use_file_rt": {"__current_case__": 0, "colrt": "1", "rt_file_choice": "true", "rt_file_delta": "0.1"}, "variableMetadata_in": {"values": [{"id": "1a4b8ebf08df6a10", "src": "hda"}]}}, "mz_delta_type": {"__current_case__": 0, "mass_delta": "0.005", "mz_delta": "Da"}, "outfiles": "NO"}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/fgiacomoni/bank_inhouse/bank_inhouse/1.2.1", "tool_stderr": "Can't work : missing paramaters (list of ids, masses, delta, ionization, characterization or inhouse_bank)\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bank_inhouse/52798007c6b2/bank_inhouse/bank_inhouse.pl line 325.\n", "tool_stdout": "The bank_inhouse program is launched as:\n./bank_inhouse.pl --input /galaxy/data/files/000/171/dataset_171194.dat --rest no --nbheader 1 --colrt 1 --rt_delta 0.1 --colmass 1 --mz_delta Da --mass_delta 0.005 --bank_in /galaxy/data/files/000/171/dataset_171194.dat --bank_name compounds_p.HMDB_XLS.txt --mzdb 1 --rtdb 1 --outputXls /galaxy/data/files/000/171/dataset_171196.dat --outputTab /galaxy/data/files/000/171/dataset_171195.dat \n", "tool_version": "1.2.1", "traceback": null, "update_time": "2022-07-11T08:56:42.700888"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4bloodexposome/94eeed7f737f/bih4bloodexposome/bih4bloodexposome.pl -input /galaxy/data/files/000/168/dataset_168729.dat -mzCol 1 -header \"1\" -ppmError 5.0 -mode POSITIVE -outputTab /galaxy/data/files/000/171/dataset_171198.dat -outputFull /galaxy/data/files/000/171/dataset_171197.dat -verbose 1", "create_time": "2022-07-11T08:56:36.473292", "encoded_id": "f22e2057729e45c8", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"outFull": ["1818c0744f54583c"], "outputTab": ["59261f87693eaee6"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "colmass": "1", "dbkey": "?", "has_header": {"__current_case__": 0, "header": "1", "header_choice": "true"}, "mode": "POSITIVE", "ppm_error": "5.0", "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "verbose": "1"}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4bloodexposome/bih4bloodexposome/0.1.2", "tool_stderr": "[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak\n..\nndef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n[WARN] the method _getPeak_ANNOTATION_TYPE can't _getPeak a undef or void string value\n", "tool_stdout": "loading /galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/auto/share/dist/Metabolomics-Fragment-Annotation/BloodExposome_v1_0.txt...\n", "tool_version": "0.1.2", "traceback": null, "update_time": "2022-07-11T10:20:15.991906"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl -input /galaxy/data/files/000/168/dataset_168731.dat -mzCol 1 -header \"1\" -ppmError 5.0 -mode POSITIVE -outputTab /galaxy/data/files/000/171/dataset_171200.dat -outputFull /galaxy/data/files/000/171/dataset_171199.dat -verbose 1", "create_time": "2022-07-11T08:56:40.948284", "encoded_id": "4857bd18ba8474b3", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"variableMetadata_in": ["7cf499d16bd542b2"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"outFull": ["14a0f2f70dbd63a9"], "outputTab": ["0c7d0b5cfc5fcdb8"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "colmass": "1", "dbkey": "?", "has_header": {"__current_case__": 0, "header": "1", "header_choice": "true"}, "mode": "POSITIVE", "ppm_error": "5.0", "variableMetadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "verbose": "1"}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/bih4maconda/0.1.4", "tool_stderr": "[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\n[WARN] the method _getContaminantExtEXACT_ADDUCT_MASS return undef when no value is available\n[WARN] the method _getContaminantExtION_FORM return unknown if getting a undef value\nArgument \"2-diethylamino-6-methyl pyrimidin-4-ol one\" isn't numeric in numeric\n\tgt (>) at /galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n (W numeric) The indicated string was fed as an argument to an operator\n that expected a numeric value instead. If you're fortunate the message\n will identify which operator was so unfortunate.\n \n Note that for the Inf and NaN (infinity and not-a-number) the\n definition of \"numeric\" is somewhat unusual: the strings themselves\n (like \"Inf\") are considered numeric, and anything following them is\n considered non-numeric.\n \nArgument \"5-hydroxy-thiabendazole\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\nArgument \"acetamiprid-N-desmethyl\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Acetochlor\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Avermectin B1a (Abamectin)\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Benzophenone-3 (Oxybenzone)\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Butocarboxim\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Carbendazim\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Cefoperazone\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Chlorfenvinphos\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Chlormequat\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Desisopropylatrazine\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Dichlorvos\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Dimethyldithiophosphate\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Emamectin B1a\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Fluopyram\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Hydroxy-tebuconazole\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Isoproturon\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Ivermectin B1a \" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Malathion dicarboxilic acid\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Methamidophos\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Metolachlor\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"N,N-diethyl-m-toluamide ou DEET\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Nigericin\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Omethoate\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Prochloraz\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"p-Toluenesulfonamide\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Rifaximin\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Spinosad A (Spinosyn A)\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"TCMTB\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Trichlorfon (Dylox)\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\nArgument \"Tylosin\" isn't numeric in numeric gt (>) at\n\t/galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/Metabolomics/Banks.pm line 566 (#1)\n[ERROR] the method _setPeakMESURED_MONOISOTOPIC_MASS can't set any undef or non numerical value\n at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda/2744d20c830a/bih4maconda/bih4maconda.pl line 186.\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n[WARN] the method _getPeakMESURED_MONOISOTOPIC_MASS can't _getPeak a undef or non numerical value\n", "tool_stdout": "loading /galaxy/server/database/dependencies/_conda/envs/__perl-metabolomics-fragment-annotation@0.6.3/lib/perl5/site_perl/auto/share/dist/Metabolomics-Fragment-Annotation/MaConDa__v1_0__extensive.xml...\nMode selected is POSITIVE...and detected query mode is ION...\n", "tool_version": "0.1.4", "traceback": null, "update_time": "2022-07-11T08:56:46.675756"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/hr2/86296c048e46/hr2/hr2_manager.pl -input \"/galaxy/data/files/000/168/dataset_168729.dat\" -nblineheader \"1\" -colId \"1\" -colmass \"1\" -tolerance \"1.0\" -mode \"neutral\" -charge \"0\" -regleOr \"NO\" -atomes \"C,N,O,H,P\" -atomessup \"None\" -output1 \"/galaxy/data/files/000/171/dataset_171201.dat\" -outputView \"/galaxy/data/files/000/171/dataset_171202.dat\" -verbose \"1\"", "create_time": "2022-07-11T08:56:48.665611", "encoded_id": "80dda503b690b98a", "exit_code": null, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"input": ["9a0ce47bd1734ae7"]}, "job_messages": null, "job_stderr": null, "job_stdout": null, "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"hr2ResView": ["e86562c804ca5387"], "variableMetadata": ["b379da601dbce29e"]}, "params": {"__input_ext": "tabular", "atomes_basic": ["C", "N", "O", "H", "P"], "atomes_sup": null, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "input_type": {"__current_case__": 0, "choice": "YES", "colId": "1", "colmass": "1", "header": {"__current_case__": 0, "header_choice": "true", "nbHeader": "1"}, "input": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "mode_condition": {"__current_case__": 0, "mode": "neutral"}, "regleOr": "NO", "tol": "1.0", "verbose": "1"}, "state": "running", "tool_id": "toolshed.g2.bx.psu.edu/repos/fgiacomoni/hr2/hr2/1.1.1.7", "tool_stderr": null, "tool_stdout": null, "tool_version": "1.1.1.7", "traceback": null, "update_time": "2022-07-11T08:56:52.287870"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/yguitton/metams_rungc/c75532b75ba1/metams_rungc/metams.r xset /galaxy/data/files/000/168/dataset_168688.dat settings \"default\" rtrange \"NULL\" ri \"NULL\" rishift \"none\" db \"NULL\" nSlaves ${GALAXY_SLOTS:-1} unkn \"c(1:5)\"", "create_time": "2022-07-11T08:57:41.882745", "encoded_id": "06a03c2a173074c3", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"xset": ["9e77b3d7d0887128"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"bpcsRawPdf": ["1def263a62efb79c"], "dataMatrix": ["31aa8fb1a3335842"], "log": ["922879d02aaf3c7e"], "peakspectra": ["8707131ca4c58182"], "peaktable": ["dba13cc23f388e58"], "rungcRData": ["46ababf9e7399751"], "sampleMetadata": ["9834d2cdb16d41df"], "ticsRawPdf": ["0dc74b9057f68cac"], "unknownPdf": ["9a6404cc34e43342"], "variableMetadata": ["7cedebd3668b57ec"], "zip": ["af7bdcee22f3c8ce"]}, "params": {"__input_ext": "rdata", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dbkey": "?", "inputs": {"__current_case__": 1, "input": "xset", "xset": {"values": [{"id": "9e77b3d7d0887128", "src": "hda"}]}}, "options_rifilter": {"__current_case__": 1, "option": "false"}, "settings": {"__current_case__": 0, "options_db": {"__current_case__": 1, "option": "hide"}, "options_ri": {"__current_case__": 1, "option": "hide"}, "options_rtrange": {"__current_case__": 1, "option": "hide"}, "setting": "gcdefault"}, "unkn": "1:5"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/yguitton/metams_rungc/metams_runGC/2.1.1", "tool_stderr": "Loading required package: CAMERA\nLoading required package: Biobase\nLoading required package: BiocGenerics\nLoading required package: parallel\n\nAttaching package: \u2018BiocGenerics\u2019\n\nThe following objects are masked from \u2018package:parallel\u2019:\n\n clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,\n clusterExport, clusterMap, parApply, parCapply, parLapply,\n parLapplyLB, parRapply, parSapply, parSapplyLB\n\nThe following objects are masked from \u2018package:stats\u2019:\n\n IQR, mad, sd, var, xtabs\n\nThe following objects are masked from \u2018package:base\u2019:\n\n Filter, Find, Map, Position, Reduce, anyDuplicated, append,\n as.data.frame, basename, cbind, colMeans, colSums, colnames,\n dirname, do.call, duplicated, eval, evalq, get, grep, grepl,\n intersect, is.unsorted, lapply, lengths, mapply, match, mget,\n order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,\n rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,\n union, unique, unsplit, which, which.max, which.min\n\nWelcome to Bioconductor\n\n Vignettes contain introductory material; view with\n 'browseVignettes()'. To cite Bioconductor, see\n 'citation(\"Biobase\")', and for packages 'citation(\"pkgname\")'.\n\nLoading required package: xcms\nLoading required package: mzR\nLoading required package: Rcpp\nLoading required package: ProtGenerics\nError: package or namespace load failed for \u2018xcms\u2019:\n package \u2018xcms\u2019 was installed by an R version with different internals; it needs to be reinstalled for use with this R version\nError: package \u2018xcms\u2019 could not be loaded\nExecution halted\n", "tool_stdout": "", "tool_version": "2.1.1", "traceback": null, "update_time": "2022-07-11T08:58:42.804354"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search/golm_ws_lib_search.pl -inputFile \"/galaxy/data/files/000/168/dataset_168729.dat\" -output_tabular \"/galaxy/data/files/000/171/dataset_171214.dat\" -output_html \"/galaxy/data/files/000/171/dataset_171215.dat\" -output_xls \"/galaxy/data/files/000/171/dataset_171216.dat\" -ri \"1898\" -riWindow \"5\" -gcColumn \"VAR5\" -mzRes \"0\" -maxHits \"100\" -maxIons \"0\" -JaccardDistanceThreshold \"0.9\" -s12GowerLegendreDistanceThreshold \"0.9\" -DotproductDistanceThreshold \"0.5\" -HammingDistanceThreshold \"500.0\" -EuclideanDistanceThreshold \"0.5\" -relative \"true\"", "create_time": "2022-07-11T08:57:48.384527", "encoded_id": "e068fd2f3e729f2c", "exit_code": 2, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"masses": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"GolmOutTab": ["681d5df1cc46e913"], "GolmOutWeb": ["fa68e87a50af12b3"], "GolmOutXlsx": ["5c30ceded02186bf"]}, "params": {"DotproductDistanceThreshold": "0.5", "EuclideanDistanceThreshold": "0.5", "HammingDistanceThreshold": "500.0", "JaccardDistanceThreshold": "0.9", "__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "columnType": "VAR5", "dbkey": "?", "input_type": {"__current_case__": 0, "choice": "YES", "masses": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "intensity_type": "true", "maxHits": "100", "maxIons": "0", "mzRes": "0", "ri": "1898", "riWindow": "5", "s12GowerLegendreDistanceThreshold": "0.9"}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/golm_ws_lib_search/2016-12-05", "tool_stderr": "Can't locate List/MoreUtils.pm in @INC (you may need to install the List::MoreUtils module) (@INC contains: /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search /galaxy/server/database/dependencies/_conda/envs/mulled-v1-3589140a91dde328cd83c624d0f4655640709027dbf7aa2f34009a8f8d36b51d/lib/site_perl/5.26.2/x86_64-linux-thread-multi /galaxy/server/database/dependencies/_conda/envs/mulled-v1-3589140a91dde328cd83c624d0f4655640709027dbf7aa2f34009a8f8d36b51d/lib/site_perl/5.26.2 /galaxy/server/database/dependencies/_conda/envs/mulled-v1-3589140a91dde328cd83c624d0f4655640709027dbf7aa2f34009a8f8d36b51d/lib/5.26.2/x86_64-linux-thread-multi /galaxy/server/database/dependencies/_conda/envs/mulled-v1-3589140a91dde328cd83c624d0f4655640709027dbf7aa2f34009a8f8d36b51d/lib/5.26.2 .) at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search/lib/msp.pm line 9.\nBEGIN failed--compilation aborted at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search/lib/msp.pm line 9.\nCompilation failed in require at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search/golm_ws_lib_search.pl line 23.\nBEGIN failed--compilation aborted at /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/golm_ws_lib_search/11779b6402bc/golm_ws_lib_search/golm_ws_lib_search.pl line 23.\n", "tool_stdout": "", "tool_version": "2016-12-05", "traceback": null, "update_time": "2022-07-11T08:57:58.745497"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/tablemerge/902ab790fb7b/tablemerge/TableMerge/tablemerge_wrap.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" Metadata_in \"/galaxy/data/files/000/168/dataset_168731.dat\" metatype \"sample\" combined_out \"/galaxy/data/files/000/171/dataset_171217.dat\"", "create_time": "2022-07-11T08:58:06.869565", "encoded_id": "e0e638e3cdd09043", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"Metadata_in": ["7cf499d16bd542b2"], "dataMatrix_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"combined_out": ["712f6c3369c5c166"]}, "params": {"Metadata_in": {"values": [{"id": "7cf499d16bd542b2", "src": "hda"}]}, "__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "metatype": "sample"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/tablemerge/tablemerge/1.0.1", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 2-diethylamino-6-methyl pyrimidin-4-ol one\n 5-hydroxy-thiabendazole\n acetamiprid-N-desmethyl\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: tab.merge -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:58:08 \n\n-------------------------------------------------------------------- \nParameters used in \"Table Merge\":\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$Metadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168731.dat\"\n\n$metatype\n[1] \"sample\"\n\n$combined_out\n[1] \"/galaxy/data/files/000/171/dataset_171217.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "1.0.1", "traceback": null, "update_time": "2022-07-11T08:58:14.244221"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/bb19b1d15732/idchoice/IDchoice/IDchoice_wrap.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" Metadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" metatype \"variable\" col_name \"\" makeunique \"no\" DM_out \"/galaxy/data/files/000/171/dataset_171218.dat\" meta_out \"/galaxy/data/files/000/171/dataset_171219.dat\"", "create_time": "2022-07-11T08:58:12.669586", "encoded_id": "ee83b2398bd91895", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"Metadata_in": ["9a0ce47bd1734ae7"], "dataMatrix_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"DM_out": ["fce4c671b05d96c0"], "meta_out": ["68f40da658754d64"]}, "params": {"Metadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "col_name": "", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "makeunique": "no", "metatype": "variable"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/idchoice/19.12", "tool_stderr": "Error in id.choice(args$dataMatrix_in, args$Metadata_in, args$metatype, : \n \n-------\nWarning: no '' column detected in variable metadata!\nPlease check your metadata file (column names are case-sensitive).\n-------\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:58:15 \n\n-------------------------------------------------------------------- \nParameters used in \"ID choice\":\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$Metadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$metatype\n[1] \"variable\"\n\n$col_name\n[1] \"\"\n\n$makeunique\n[1] \"no\"\n\n$DM_out\n[1] \"/galaxy/data/files/000/171/dataset_171218.dat\"\n\n$meta_out\n[1] \"/galaxy/data/files/000/171/dataset_171219.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "19.12", "traceback": null, "update_time": "2022-07-11T08:58:20.418525"}, {"command_line": "Rscript '/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/cfd7c4aa5c26/generic_filter/GalFilter/filter_wrap.R' dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" Numeric \"FALSE\" Factors \"FALSE\" dataMatrix_out \"/galaxy/data/files/000/171/dataset_171220.dat\" sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171221.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171222.dat\"", "create_time": "2022-07-11T08:58:20.586503", "encoded_id": "e2df485a3816ce19", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"dataMatrix_out": ["05dbaecc47f3d900"], "sampleMetadata_out": ["1ffec668af5b38c6"], "variableMetadata_out": ["a5247333ab4996eb"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "numeric_condition": {"Factors": "FALSE", "__current_case__": 1}, "qualitative_condition": {"Factors": "FALSE", "__current_case__": 1}, "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2020.01", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: filters -> check.err\nExecution halted\n", "tool_stdout": "\nJob starting time:\n Mon 11 Jul 2022 08:58:22 \n\n-------------------------------------------------------------------- \nParameters used in \"Generic Filter\":\n\n$dataMatrix_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$sampleMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$variableMetadata_in\n[1] \"/galaxy/data/files/000/168/dataset_168729.dat\"\n\n$Numeric\n[1] \"FALSE\"\n\n$Factors\n[1] \"FALSE\"\n\n$dataMatrix_out\n[1] \"/galaxy/data/files/000/171/dataset_171220.dat\"\n\n$sampleMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171221.dat\"\n\n$variableMetadata_out\n[1] \"/galaxy/data/files/000/171/dataset_171222.dat\"\n\n--------------------------------------------------------------------\n\n", "tool_version": "2020.01", "traceback": null, "update_time": "2022-07-11T08:58:29.625740"}, {"command_line": "python /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/626658afe4cb/column_maker/column_maker.py /galaxy/data/files/000/168/dataset_168729.dat /galaxy/data/files/000/171/dataset_171223.dat \"c3-c2\" no 14 \"int,int,int,int,int,float,float,float,float,int,int,int,int,int\"", "create_time": "2022-07-11T08:58:27.151261", "encoded_id": "6b7610073ba9bd55", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"input": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"out_file1": ["79c7ce84f3ac839b"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "cond": "c3-c2", "dbkey": "?", "input": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "round": "no"}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0", "tool_stderr": " File \"/galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/626658afe4cb/column_maker/column_maker.py\", line 107\n exec code\n ^^^^^^^^^\nSyntaxError: Missing parentheses in call to 'exec'. Did you mean exec(...)?\n", "tool_stdout": "", "tool_version": "1.1.0", "traceback": null, "update_time": "2022-07-11T08:58:32.792136"}, {"command_line": "perl /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/cut_columns/cec635fab700/cut_columns/cutWrapper.pl \"/galaxy/data/files/000/168/dataset_168729.dat\" \"c1,c2\" \"T\" \"/galaxy/data/files/000/171/dataset_171224.dat\"", "create_time": "2022-07-11T08:58:35.891597", "encoded_id": "f48d5840e497fe72", "exit_code": 0, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"input": ["9a0ce47bd1734ae7"]}, "job_messages": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"out_file1": ["2971c5537d299db4"]}, "params": {"__input_ext": "tabular", "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "columnList": "c1,c2", "dbkey": "?", "delimiter": "T", "input": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "ok", "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/cut_columns/Cut1/1.0.2", "tool_stderr": "", "tool_stdout": "", "tool_version": "1.0.2", "traceback": null, "update_time": "2022-07-11T08:58:41.645419"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/acdf51018708/qualitymetrics/qualitymetrics_wrapper.R dataMatrix_in \"/galaxy/data/files/000/171/dataset_171216.dat\" sampleMetadata_in \"/galaxy/data/files/000/171/dataset_171216.dat\" variableMetadata_in \"/galaxy/data/files/000/171/dataset_171216.dat\" CV \"FALSE\" Compa \"TRUE\" seuil \"1\" poolAsPool1L \"TRUE\" sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171225.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171226.dat\" figure \"/galaxy/data/files/000/171/dataset_171227.dat\" information \"/galaxy/data/files/000/171/dataset_171228.dat\"", "create_time": "2022-07-11T09:50:19.915887", "encoded_id": "82fedebbca744c31", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["5c30ceded02186bf"], "sampleMetadata_in": ["5c30ceded02186bf"], "variableMetadata_in": ["5c30ceded02186bf"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["d7cce06221fced1d"], "information": ["39801b7a8e3aff00"], "sampleMetadata_out": ["f511e1fd77a53e45"], "variableMetadata_out": ["f7f4898518887897"]}, "params": {"CV_condition": {"CV": "FALSE", "Compa": "TRUE", "__current_case__": 1, "seuil": "1"}, "__input_ext": "tabular", "advPar": {"__current_case__": 1, "optC": "default", "poolAsPool1L": "TRUE"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "5c30ceded02186bf", "src": "hda"}]}, "dbkey": "?", "sampleMetadata_in": {"values": [{"id": "5c30ceded02186bf", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "5c30ceded02186bf", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8", "tool_stderr": "Error in read.table(ion.file.in, sep = \"\\t\", header = TRUE, check.names = FALSE, : \n no lines available in input\nCalls: QualityControl -> read.table\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.8", "traceback": null, "update_time": "2022-07-11T09:50:27.146665"}, {"command_line": "Rscript /galaxy/server/database/shed_tools/toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/acdf51018708/qualitymetrics/qualitymetrics_wrapper.R dataMatrix_in \"/galaxy/data/files/000/168/dataset_168729.dat\" sampleMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" variableMetadata_in \"/galaxy/data/files/000/168/dataset_168729.dat\" CV \"FALSE\" Compa \"TRUE\" seuil \"1\" poolAsPool1L \"TRUE\" sampleMetadata_out \"/galaxy/data/files/000/171/dataset_171229.dat\" variableMetadata_out \"/galaxy/data/files/000/171/dataset_171230.dat\" figure \"/galaxy/data/files/000/171/dataset_171231.dat\" information \"/galaxy/data/files/000/171/dataset_171232.dat\"", "create_time": "2022-07-11T09:50:50.765058", "encoded_id": "85b7df1e846649ed", "exit_code": 1, "galaxy_version": "22.01", "implicit_output_dataset_collection_mapping": {}, "info": null, "input_dataset_collection_element_mapping": {}, "input_dataset_collection_mapping": {}, "input_dataset_mapping": {"dataMatrix_in": ["9a0ce47bd1734ae7"], "sampleMetadata_in": ["9a0ce47bd1734ae7"], "variableMetadata_in": ["9a0ce47bd1734ae7"]}, "job_messages": [{"code_desc": "", "desc": "Fatal error: Exit code 1 ()", "error_level": 3, "exit_code": 1, "type": "exit_code"}], "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_dataset_collection_mapping": {}, "output_dataset_mapping": {"figure": ["5925749ba92fe34e"], "information": ["e448c300372b4cc9"], "sampleMetadata_out": ["63ccf149b0a55b01"], "variableMetadata_out": ["b9d67c701c9febf7"]}, "params": {"CV_condition": {"CV": "FALSE", "Compa": "TRUE", "__current_case__": 1, "seuil": "1"}, "__input_ext": "tabular", "advPar": {"__current_case__": 1, "optC": "default", "poolAsPool1L": "TRUE"}, "chromInfo": "/galaxy/server/tool-data/shared/ucsc/chrom/?.len", "dataMatrix_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "dbkey": "?", "sampleMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}, "variableMetadata_in": {"values": [{"id": "9a0ce47bd1734ae7", "src": "hda"}]}}, "state": "error", "tool_id": "toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8", "tool_stderr": "Error in check.err(table.check) : \n- - - - - - - - -\n\nData matrix and sample metadata do not match regarding sample identifiers.\n For example, the following identifiers found in the data matrix\n do not appear in the sample metadata file:\n pid\n precursorScanNum\n acquisitionNum\n\n For example, the following identifiers found in the sample metadata file\n do not appear in the data matrix:\n 674\n 674\n 674\n\nPlease check your data.\n\n- - - - - - - - -\nCalls: QualityControl -> check.err\nExecution halted\n", "tool_stdout": "", "tool_version": "2.2.8", "traceback": null, "update_time": "2022-07-11T09:51:01.169119"}] \ No newline at end of file
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var(--bs-accordion-border-color)}.accordion-button:not(.collapsed)::after{background-image:var(--bs-accordion-btn-active-icon);transform:var(--bs-accordion-btn-icon-transform)}.accordion-button::after{flex-shrink:0;width:var(--bs-accordion-btn-icon-width);height:var(--bs-accordion-btn-icon-width);margin-left:auto;content:"";background-image:var(--bs-accordion-btn-icon);background-repeat:no-repeat;background-size:var(--bs-accordion-btn-icon-width);transition:var(--bs-accordion-btn-icon-transition)}@media (prefers-reduced-motion:reduce){.accordion-button::after{transition:none}}.accordion-button:hover{z-index:2}.accordion-button:focus{z-index:3;border-color:var(--bs-accordion-btn-focus-border-color);outline:0;box-shadow:var(--bs-accordion-btn-focus-box-shadow)}.accordion-header{margin-bottom:0}.accordion-item{color:var(--bs-accordion-color);background-color:var(--bs-accordion-bg);border:var(--bs-accordion-border-width) solid var(--bs-accordion-border-color)}.accordion-item:first-of-type{border-top-left-radius:var(--bs-accordion-border-radius);border-top-right-radius:var(--bs-accordion-border-radius)}.accordion-item:first-of-type .accordion-button{border-top-left-radius:var(--bs-accordion-inner-border-radius);border-top-right-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:not(:first-of-type){border-top:0}.accordion-item:last-of-type{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-item:last-of-type .accordion-button.collapsed{border-bottom-right-radius:var(--bs-accordion-inner-border-radius);border-bottom-left-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:last-of-type .accordion-collapse{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-body{padding:var(--bs-accordion-body-padding-y) 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"/")}.breadcrumb-item.active{color:var(--bs-breadcrumb-item-active-color)}.pagination{--bs-pagination-padding-x:0.75rem;--bs-pagination-padding-y:0.375rem;--bs-pagination-font-size:1rem;--bs-pagination-color:var(--bs-link-color);--bs-pagination-bg:#fff;--bs-pagination-border-width:1px;--bs-pagination-border-color:#dee2e6;--bs-pagination-border-radius:0.375rem;--bs-pagination-hover-color:var(--bs-link-hover-color);--bs-pagination-hover-bg:#e9ecef;--bs-pagination-hover-border-color:#dee2e6;--bs-pagination-focus-color:var(--bs-link-hover-color);--bs-pagination-focus-bg:#e9ecef;--bs-pagination-focus-box-shadow:0 0 0 0.25rem rgba(13, 110, 253, 0.25);--bs-pagination-active-color:#fff;--bs-pagination-active-bg:#0d6efd;--bs-pagination-active-border-color:#0d6efd;--bs-pagination-disabled-color:#6c757d;--bs-pagination-disabled-bg:#fff;--bs-pagination-disabled-border-color:#dee2e6;display:flex;padding-left:0;list-style:none}.page-link{position:relative;display:block;padding:var(--bs-pagination-padding-y) var(--bs-pagination-padding-x);font-size:var(--bs-pagination-font-size);color:var(--bs-pagination-color);text-decoration:none;background-color:var(--bs-pagination-bg);border:var(--bs-pagination-border-width) solid var(--bs-pagination-border-color);transition:color .15s ease-in-out,background-color .15s ease-in-out,border-color .15s ease-in-out,box-shadow .15s ease-in-out}@media 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.page-link{border-top-left-radius:var(--bs-pagination-border-radius);border-bottom-left-radius:var(--bs-pagination-border-radius)}.page-item:last-child .page-link{border-top-right-radius:var(--bs-pagination-border-radius);border-bottom-right-radius:var(--bs-pagination-border-radius)}.pagination-lg{--bs-pagination-padding-x:1.5rem;--bs-pagination-padding-y:0.75rem;--bs-pagination-font-size:1.25rem;--bs-pagination-border-radius:0.5rem}.pagination-sm{--bs-pagination-padding-x:0.5rem;--bs-pagination-padding-y:0.25rem;--bs-pagination-font-size:0.875rem;--bs-pagination-border-radius:0.25rem}.badge{--bs-badge-padding-x:0.65em;--bs-badge-padding-y:0.35em;--bs-badge-font-size:0.75em;--bs-badge-font-weight:700;--bs-badge-color:#fff;--bs-badge-border-radius:0.375rem;display:inline-block;padding:var(--bs-badge-padding-y) var(--bs-badge-padding-x);font-size:var(--bs-badge-font-size);font-weight:var(--bs-badge-font-weight);line-height:1;color:var(--bs-badge-color);text-align:center;white-space:nowrap;vertical-align:baseline;border-radius:var(--bs-badge-border-radius,0)}.badge:empty{display:none}.btn .badge{position:relative;top:-1px}.alert{--bs-alert-bg:transparent;--bs-alert-padding-x:1rem;--bs-alert-padding-y:1rem;--bs-alert-margin-bottom:1rem;--bs-alert-color:inherit;--bs-alert-border-color:transparent;--bs-alert-border:1px solid var(--bs-alert-border-color);--bs-alert-border-radius:0.375rem;position:relative;padding:var(--bs-alert-padding-y) var(--bs-alert-padding-x);margin-bottom:var(--bs-alert-margin-bottom);color:var(--bs-alert-color);background-color:var(--bs-alert-bg);border:var(--bs-alert-border);border-radius:var(--bs-alert-border-radius,0)}.alert-heading{color:inherit}.alert-link{font-weight:700}.alert-dismissible{padding-right:3rem}.alert-dismissible .btn-close{position:absolute;top:0;right:0;z-index:2;padding:1.25rem 1rem}.alert-primary{--bs-alert-color:#084298;--bs-alert-bg:#cfe2ff;--bs-alert-border-color:#b6d4fe}.alert-primary .alert-link{color:#06357a}.alert-secondary{--bs-alert-color:#41464b;--bs-alert-bg:#e2e3e5;--bs-alert-border-color:#d3d6d8}.alert-secondary .alert-link{color:#34383c}.alert-success{--bs-alert-color:#0f5132;--bs-alert-bg:#d1e7dd;--bs-alert-border-color:#badbcc}.alert-success .alert-link{color:#0c4128}.alert-info{--bs-alert-color:#055160;--bs-alert-bg:#cff4fc;--bs-alert-border-color:#b6effb}.alert-info .alert-link{color:#04414d}.alert-warning{--bs-alert-color:#664d03;--bs-alert-bg:#fff3cd;--bs-alert-border-color:#ffecb5}.alert-warning .alert-link{color:#523e02}.alert-danger{--bs-alert-color:#842029;--bs-alert-bg:#f8d7da;--bs-alert-border-color:#f5c2c7}.alert-danger .alert-link{color:#6a1a21}.alert-light{--bs-alert-color:#636464;--bs-alert-bg:#fefefe;--bs-alert-border-color:#fdfdfe}.alert-light .alert-link{color:#4f5050}.alert-dark{--bs-alert-color:#141619;--bs-alert-bg:#d3d3d4;--bs-alert-border-color:#bcbebf}.alert-dark .alert-link{color:#101214}@-webkit-keyframes progress-bar-stripes{0%{background-position-x:1rem}}@keyframes progress-bar-stripes{0%{background-position-x:1rem}}.progress{--bs-progress-height:1rem;--bs-progress-font-size:0.75rem;--bs-progress-bg:#e9ecef;--bs-progress-border-radius:0.375rem;--bs-progress-box-shadow:inset 0 1px 2px rgba(0, 0, 0, 0.075);--bs-progress-bar-color:#fff;--bs-progress-bar-bg:#0d6efd;--bs-progress-bar-transition:width 0.6s ease;display:flex;height:var(--bs-progress-height);overflow:hidden;font-size:var(--bs-progress-font-size);background-color:var(--bs-progress-bg);border-radius:var(--bs-progress-border-radius)}.progress-bar{display:flex;flex-direction:column;justify-content:center;overflow:hidden;color:var(--bs-progress-bar-color);text-align:center;white-space:nowrap;background-color:var(--bs-progress-bar-bg);transition:var(--bs-progress-bar-transition)}@media (prefers-reduced-motion:reduce){.progress-bar{transition:none}}.progress-bar-striped{background-image:linear-gradient(45deg,rgba(255,255,255,.15) 25%,transparent 25%,transparent 50%,rgba(255,255,255,.15) 50%,rgba(255,255,255,.15) 75%,transparent 75%,transparent);background-size:var(--bs-progress-height) var(--bs-progress-height)}.progress-bar-animated{-webkit-animation:1s linear infinite progress-bar-stripes;animation:1s linear infinite progress-bar-stripes}@media (prefers-reduced-motion:reduce){.progress-bar-animated{-webkit-animation:none;animation:none}}.list-group{--bs-list-group-color:#212529;--bs-list-group-bg:#fff;--bs-list-group-border-color:rgba(0, 0, 0, 0.125);--bs-list-group-border-width:1px;--bs-list-group-border-radius:0.375rem;--bs-list-group-item-padding-x:1rem;--bs-list-group-item-padding-y:0.5rem;--bs-list-group-action-color:#495057;--bs-list-group-action-hover-color:#495057;--bs-list-group-action-hover-bg:#f8f9fa;--bs-list-group-action-active-color:#212529;--bs-list-group-action-active-bg:#e9ecef;--bs-list-group-disabled-color:#6c757d;--bs-list-group-disabled-bg:#fff;--bs-list-group-active-color:#fff;--bs-list-group-active-bg:#0d6efd;--bs-list-group-active-border-color:#0d6efd;display:flex;flex-direction:column;padding-left:0;margin-bottom:0;border-radius:var(--bs-list-group-border-radius)}.list-group-numbered{list-style-type:none;counter-reset:section}.list-group-numbered>.list-group-item::before{content:counters(section, ".") 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";counter-increment:section}.list-group-item-action{width:100%;color:var(--bs-list-group-action-color);text-align:inherit}.list-group-item-action:focus,.list-group-item-action:hover{z-index:1;color:var(--bs-list-group-action-hover-color);text-decoration:none;background-color:var(--bs-list-group-action-hover-bg)}.list-group-item-action:active{color:var(--bs-list-group-action-active-color);background-color:var(--bs-list-group-action-active-bg)}.list-group-item{position:relative;display:block;padding:var(--bs-list-group-item-padding-y) var(--bs-list-group-item-padding-x);color:var(--bs-list-group-color);text-decoration:none;background-color:var(--bs-list-group-bg);border:var(--bs-list-group-border-width) solid 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(min-width:1200px){.fs-1{font-size:2.5rem!important}.fs-2{font-size:2rem!important}.fs-3{font-size:1.75rem!important}.fs-4{font-size:1.5rem!important}}@media print{.d-print-inline{display:inline!important}.d-print-inline-block{display:inline-block!important}.d-print-block{display:block!important}.d-print-grid{display:grid!important}.d-print-table{display:table!important}.d-print-table-row{display:table-row!important}.d-print-table-cell{display:table-cell!important}.d-print-flex{display:flex!important}.d-print-inline-flex{display:inline-flex!important}.d-print-none{display:none!important}} +/*# sourceMappingURL=bootstrap.min.css.map */</style> + <body + class="bg-secondary bg-gradient" + style="--bs-bg-opacity: .1; padding-top: 80px;" + > + <nav + class="navbar justify-content-center navbar-dark navbar-expand" + id="history_metadata_extractor_masthead" + style=" + background-color: #2c3143; + top:0px; + position:fixed; + width: 100%; + z-index: 999 ; + " + > + <a class="navbar-brand"> + <span class="navbar-brand-title"> <h1>Galaxy - 22.01</h1></span> + </a> + + <button id="history_metadata_extractor_top" class="btn btn-outline-light d-block m-2"> + Top + </button> + <button id="history_metadata_extractor_folder" class="btn btn-outline-light d-block m-2"> + Fold/Unfold tables + </button> + <button id="history_metadata_extractor_toggle_deleted" class="btn btn-outline-light d-block m-2"> + Show/Hide deleted + </button> + <button id="history_metadata_extractor_bottom" class="btn btn-outline-light d-block m-2"> + Bottom + </button> + </nav> + <div + id="history_metadata_extractor_content" + class="container pt-2 bg-white" + style="overflow-y: auto ; height: 100%" + > + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [1] - __DATA_FETCH__ - 0.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_count</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">files</th> + <td>file_data: /galaxy/data/tmp/c400d309afc6474c8b5d1900ad47051a</td> + <td>test.rdata</td> + <td>auto</td> + <td>232343</td> + </tr><tr class=""> + <th scope="row">paramfile</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">request_version</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">auto_decompress</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">check_content</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [42] - __DATA_FETCH__ - 0.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_count</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">files</th> + <td>file_data: /galaxy/data/tmp/e44f6de2f1fd410ab5ab76d3589ed689</td> + <td>peaklist_fragments.tsv</td> + <td>auto</td> + <td>232384</td> + </tr><tr class=""> + <th scope="row">paramfile</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">request_version</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">auto_decompress</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">check_content</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - csv_to_tabular - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">__target_datatype__</th> + <td>tabular</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">csv</th> + <td>eee378ebc66a66f1</td> + <td>peaklist_precursors.csv</td> + <td>csv</td> + <td>43</td> + </tr> + </table> + </div> + + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [43] - __DATA_FETCH__ - 0.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_count</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">files</th> + <td>file_data: /galaxy/data/tmp/7964e374d9fa423cb3438b054c7f91f0</td> + <td>peaklist_precursors.csv</td> + <td>auto</td> + <td>232385</td> + </tr><tr class=""> + <th scope="row">paramfile</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">request_version</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">auto_decompress</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">check_content</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [44] - __DATA_FETCH__ - 0.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_count</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">files</th> + <td>file_data: /galaxy/data/tmp/2e503324d9d54059953fac2d6151c762</td> + <td>compounds_pos.txt</td> + <td>auto</td> + <td>232386</td> + </tr><tr class=""> + <th scope="row">paramfile</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">request_version</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">auto_decompress</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">check_content</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - __DATA_FETCH__ - 0.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_count</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">files</th> + <td>file_data: /galaxy/data/tmp/88d2ff5c70f646e182b4b058607d486d</td> + <td>image.png</td> + <td>auto</td> + <td>232870</td> + </tr><tr class=""> + <th scope="row">paramfile</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">request_version</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">auto_decompress</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">check_content</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (None) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (None) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - intens_check - 1.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">chosen_stat</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>no_class</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - intens_check - 1.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">chosen_stat</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>no_class</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.6.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.6.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.6.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - idchoice - 19.12 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">Metadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">col_name</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">makeunique</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">metatype</th> + <td>variable</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - idchoice - 19.12 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">Metadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">col_name</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">makeunique</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">metatype</th> + <td>variable</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Analytic_correlation_filtration - 2019-06-20 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">correl_threshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">file_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">mass_file_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">mass_list</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_threshold</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">repres_opt_selector</th> + <td>intensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_threshold</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Analytic_correlation_filtration - 2019-06-20 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">correl_threshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">file_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">mass_file_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">mass_list</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_threshold</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">repres_opt_selector</th> + <td>intensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_threshold</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - correlation_analysis - 1.0.1+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">select_funtion</th> + <td>sort_only</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">select_input_type</th> + <td>select_input_from_w4m</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_retcor - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">extraPeaks</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakGroups</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">family</th> + <td>gaussian</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">span</th> + <td>0.2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">smooth</th> + <td>loess</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_retcor - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">extraPeaks</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakGroups</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">family</th> + <td>gaussian</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">span</th> + <td>0.2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">smooth</th> + <td>loess</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_summary - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_merge - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_merge - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_xcmsSet - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterAcquisitionNum</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterMz</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterRt</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">impute</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">max</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzdiff</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklist</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">snthresh</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">steps</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">fwhm</th> + <td>30</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>MatchedFilter</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_xcmsSet - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterAcquisitionNum</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterMz</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filterRt</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">impute</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">max</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzdiff</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklist</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">snthresh</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">steps</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">fwhm</th> + <td>30</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>MatchedFilter</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_export_samplemetadata - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_plot_chromatogram - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_plot_chromatogram - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_CAMERA_annotateDiffreport - 2.2.6+camera1.48.0-galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzabs</th> + <td>0.015</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxcharge</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxiso</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minfrac</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perfwhm</th> + <td>0.6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sigma</th> + <td>6</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">max_peaks</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">polarity</th> + <td>negative</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">multiplier</th> + <td>3</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rules_select</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCaS</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcCiS</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">calcIso</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cor_eic_th</th> + <td>0.75</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphMethod</th> + <td>hcs</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">pval</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">quick</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_retcor - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">extraPeaks</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakGroups</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">family</th> + <td>gaussian</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">span</th> + <td>0.2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">smooth</th> + <td>loess</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_retcor - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">extraPeaks</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakGroups</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">family</th> + <td>gaussian</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">span</th> + <td>0.2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">smooth</th> + <td>loess</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_summary - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_summary - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_group - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">maxFeatures</th> + <td>50</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">binSize</th> + <td>0.25</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bw</th> + <td>30.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>PeakDensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minFraction</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">minSamples</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_merge - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_merge - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_export_samplemetadata - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_plot_chromatogram - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - xcms_plot_chromatogram - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">images</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_xcms_fillPeaks - 3.12.0+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">expandMz</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">expandRt</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">file_load_select</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">image</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">convertRTMinute</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">intval</th> + <td>into</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">naTOzero</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsMZ</th> + <td>4</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">numDigitsRT</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">peaklistBool</th> + <td>True</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - intens_check - 1.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">chosen_stat</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>no_class</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - intens_check - 1.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">chosen_stat</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>no_class</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Analytic_correlation_filtration - 2019-06-20 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">correl_threshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">file_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mass_file_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mass_list</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_threshold</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">repres_opt_selector</th> + <td>intensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_threshold</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Analytic_correlation_filtration - 2019-06-20 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">correl_threshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">file_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mass_file_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mass_list</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_threshold</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">repres_opt_selector</th> + <td>intensity</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_threshold</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - correlation_analysis - 1.0.1+galaxy0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">select_funtion</th> + <td>sort_only</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">select_input_type</th> + <td>select_input_from_w4m</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Transformation - 2.2.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">method</th> + <td>log2</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Transformation - 2.2.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">method</th> + <td>log2</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - normalization - 1.0.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">graphType</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - normalization - 1.0.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">graphType</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (127) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Batch_correction - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">detail</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>linear</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">valnull</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Determine_BC - 3.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">ref_factor</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">batch_col_name</th> + <td>batch</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">injection_order_col_name</th> + <td>injectionOrder</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagBlank</th> + <td>blank</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagPool</th> + <td>pool</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleTypeTagSample</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sample_type_col_name</th> + <td>sampleType</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - corrtable - 1.0.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">corr_method</th> + <td>pearson</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">filter</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_corr</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_heatmap</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">plot_choice</th> + <td>auto</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">reorder_var</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab1_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab1_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tab2_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tab2_samples</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Multivariate - 2.4.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">algorithm</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">cross_validation_number</th> + <td>7</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">log10L</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">permutation_number</th> + <td>20</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">scaling</th> + <td>standard</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">abcissa_parameter</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">color_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ellipsis_component</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">graphic_type</th> + <td>summary</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">labels_parameter</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">magnify_text</th> + <td>0.8</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ordinate_parameter</th> + <td>2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">orthogonal_component_number</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">predictive_component_number</th> + <td>NA</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">response_component</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">save_rdata</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">test_sample</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - biosigner - 2.2.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">opcC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">respC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - biosigner - 2.2.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">opcC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">respC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - biosigner - 2.2.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">opcC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">respC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - biosigner - 2.2.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">opcC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">respC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Univariate - 2.2.4 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">adjC</th> + <td>fdr</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">facC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tesC</th> + <td>ttest</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">thrN</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Univariate - 2.2.4 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">adjC</th> + <td>fdr</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">facC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tesC</th> + <td>ttest</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">thrN</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Univariate - 2.2.4 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">adjC</th> + <td>fdr</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">facC</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">tesC</th> + <td>ttest</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">thrN</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_anova - 1.2.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">condition_1</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">conditions</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dec</th> + <td>.</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">interaction</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleinfo</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">selection_method</th> + <td>intersection</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sep</th> + <td>tabulation</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">threshold</th> + <td>0.01</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">varinfo</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - abims_anova - 1.2.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">condition_1</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">conditions</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dec</th> + <td>.</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">interaction</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">method</th> + <td>none</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>row</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleinfo</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">selection_method</th> + <td>intersection</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sep</th> + <td>tabulation</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">threshold</th> + <td>0.01</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">varinfo</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.7.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.7.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - wsdl_hmdb - 1.7.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">advancedFeatures</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delta</th> + <td>0.05</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colfactor</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>yes</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">maxquery</th> + <td>10</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">data_neutral_adducts</th> + <td>M</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - bank_inhouse - 1.2.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">bank_in</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bank_rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rtdb</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzdb</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perso_bank</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbheader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colrt</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_file_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_file_delta</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_delta</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mz_delta</th> + <td>Da</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">outfiles</th> + <td>NO</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - bank_inhouse - 1.2.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (255) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">bank_in</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">bank_rt_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rtdb</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzdb</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">perso_bank</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbheader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colrt</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_file_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">rt_file_delta</th> + <td>0.1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mass_delta</th> + <td>0.005</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mz_delta</th> + <td>Da</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">outfiles</th> + <td>NO</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [576] - bih4bloodexposome - 0.1.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>POSITIVE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm_error</th> + <td>5.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [577] - bih4bloodexposome - 0.1.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>POSITIVE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm_error</th> + <td>5.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - bih4maconda - 0.1.4 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>POSITIVE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm_error</th> + <td>5.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - bih4maconda - 0.1.4 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>POSITIVE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ppm_error</th> + <td>5.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [580] - hr2 - 1.1.1.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (None) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">atomes_basic</th> + <td>C;N;O;H;P</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">atomes_sup</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colId</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">regleOr</th> + <td>NO</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tol</th> + <td>1.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [581] - hr2 - 1.1.1.7 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (None) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">atomes_basic</th> + <td>C;N;O;H;P</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">atomes_sup</th> + <td>None</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colId</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">colmass</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">header_choice</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">nbHeader</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">mode</th> + <td>neutral</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">regleOr</th> + <td>NO</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">tol</th> + <td>1.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">verbose</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - metams_runGC - 2.1.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">input</th> + <td>xset</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">xset</th> + <td>9e77b3d7d0887128</td> + <td>test.rdata</td> + <td>rdata</td> + <td>1</td> + </tr><tr class=""> + <th scope="row">option</th> + <td>false</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">option</th> + <td>hide</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">setting</th> + <td>gcdefault</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">unkn</th> + <td>1:5</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [595] - golm_ws_lib_search - 2016-12-05 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (2) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">DotproductDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">EuclideanDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">HammingDistanceThreshold</th> + <td>500.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">JaccardDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">columnType</th> + <td>VAR5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">intensity_type</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxHits</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxIons</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzRes</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ri</th> + <td>1898</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">riWindow</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">s12GowerLegendreDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [593] - golm_ws_lib_search - 2016-12-05 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (2) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">DotproductDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">EuclideanDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">HammingDistanceThreshold</th> + <td>500.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">JaccardDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">columnType</th> + <td>VAR5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">intensity_type</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxHits</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxIons</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzRes</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ri</th> + <td>1898</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">riWindow</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">s12GowerLegendreDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [594] - golm_ws_lib_search - 2016-12-05 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (2) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">DotproductDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">EuclideanDistanceThreshold</th> + <td>0.5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">HammingDistanceThreshold</th> + <td>500.0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">JaccardDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">columnType</th> + <td>VAR5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">choice</th> + <td>YES</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">masses</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">intensity_type</th> + <td>true</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxHits</th> + <td>100</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">maxIons</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">mzRes</th> + <td>0</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">ri</th> + <td>1898</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">riWindow</th> + <td>5</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">s12GowerLegendreDistanceThreshold</th> + <td>0.9</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - tablemerge - 1.0.1 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">Metadata_in</th> + <td>7cf499d16bd542b2</td> + <td>compounds_pos.txt</td> + <td>tabular</td> + <td>44</td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">metatype</th> + <td>sample</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - idchoice - 19.12 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">Metadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">col_name</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">makeunique</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">metatype</th> + <td>variable</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - idchoice - 19.12 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">Metadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">col_name</th> + <td></td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">makeunique</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">metatype</th> + <td>variable</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - generic_filter - 2020.01 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - generic_filter - 2020.01 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - generic_filter - 2020.01 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Factors</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [602] - Add_a_column1 - 1.1.0 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">cond</th> + <td>c3-c2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">round</th> + <td>no</td> + <td></td> + <td></td> + <td></td> + </tr> + </table> + </div> + + + <div class="alert alert-success history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - Cut1 - 1.0.2 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Ok (0) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">columnList</th> + <td>c1,c2</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">delimiter</th> + <td>T</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">input</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>5c30ceded02186bf</td> + <td>peaklist_fragmen.GOLM.txt</td> + <td>tabular</td> + <td>595</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + + <div class="alert alert-danger history_metadata_extractor_deleted"> + <h2 + class="history_metadata_extractor_h2" + style="cursor: pointer" + title="click to fold/unfold the table" + > + [DELETED] - quality_metrics - 2.2.8 + </h2> + <p> + Outputs: + </p> + <p class="history_metadata_extractor_status"> + Status: Failed (1) + </p> + <p class="history_metadata_extractor_glitter"></p> + <table class=" + table + table-bordered + table-dark + table-striped + table-hover + d-block + overflow-auto + history_metadata_extractor_table + "> + <thead> + <tr> + <th scope="col"></th> + <th scope="col">value</th> + <th scope="col">name</th> + <th scope="col">extension</th> + <th scope="col">hid</th> + </tr> + </thead> + <tr class=""> + <th scope="row">CV</th> + <td>FALSE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">Compa</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">seuil</th> + <td>1</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">optC</th> + <td>default</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">poolAsPool1L</th> + <td>TRUE</td> + <td></td> + <td></td> + <td></td> + </tr><tr class=""> + <th scope="row">dataMatrix_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">sampleMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr><tr class=""> + <th scope="row">variableMetadata_in</th> + <td>9a0ce47bd1734ae7</td> + <td>peaklist_fragments.tsv</td> + <td>tabular</td> + <td>42</td> + </tr> + </table> + </div> + + <footer class="d-block py-3"> + <div class="container text-center"> + <p> + Made with + <span id="glitter-generator" title="click for glitter and kawaii >‿<"> + ❤️ + </span> + by Lain (mail: lain pavot inrae fr) - feel free to contact me for improvement requests + </p> + </div> + </footer> + </div> + <script> + +var content = document.getElementById("history_metadata_extractor_content") ; +document.getElementById("history_metadata_extractor_top").onclick = () => { + content.scrollTo(0, 0) ; +} ; +document.getElementById("history_metadata_extractor_bottom").onclick = () => { + content.scrollTo(0, content.scrollHeight) ; +} ; +var folded = false ; +document.getElementById("history_metadata_extractor_folder").onclick = (e) => { + if (folded) { + var func = (item) => item.classList.remove("d-none") ; + } else { + var func = (item) => item.classList.add("d-none") ; + } + Array.prototype.forEach.call(document.getElementsByClassName("history_metadata_extractor_table"), func) ; + folded = ! folded ; +} ; + +var kawaii = false ; +document.getElementById("glitter-generator").onclick = (e) => { + if (kawaii) { + var func = (item) => item.classList.remove("kawaii") ; + } else { + var func = (item) => item.classList.add("kawaii") ; + } + Array.prototype.forEach.call(document.querySelectorAll("[class^=history_metadata_extractor_]"), func) ; + kawaii = ! kawaii ; +} ; + +var show_deleted = true ; +document.getElementById("history_metadata_extractor_toggle_deleted").onclick = (e) => { + show_deleted = !show_deleted ; + if (show_deleted) { + var func = (item) => item.classList.remove("d-none") ; + } else { + var func = (item) => item.classList.add("d-none") ; + } + Array.prototype.forEach.call( + document.getElementsByClassName("history_metadata_extractor_deleted"), + func + ) ; +} ; + +Array.prototype.forEach.call(document.getElementsByClassName( + "history_metadata_extractor_h2"), + (h2) => { + var table = h2.nextSibling.nextSibling.nextSibling.nextSibling.nextSibling.nextSibling ; + h2.onclick = (e) => { + if (table.classList.contains("d-none")) { + table.classList.remove("d-none") ; + } else { + table.classList.add("d-none") ; + } + } + } +) + + </script> + </body> +</html> \ No newline at end of file
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var(--bs-accordion-border-color)}.accordion-button:not(.collapsed)::after{background-image:var(--bs-accordion-btn-active-icon);transform:var(--bs-accordion-btn-icon-transform)}.accordion-button::after{flex-shrink:0;width:var(--bs-accordion-btn-icon-width);height:var(--bs-accordion-btn-icon-width);margin-left:auto;content:"";background-image:var(--bs-accordion-btn-icon);background-repeat:no-repeat;background-size:var(--bs-accordion-btn-icon-width);transition:var(--bs-accordion-btn-icon-transition)}@media (prefers-reduced-motion:reduce){.accordion-button::after{transition:none}}.accordion-button:hover{z-index:2}.accordion-button:focus{z-index:3;border-color:var(--bs-accordion-btn-focus-border-color);outline:0;box-shadow:var(--bs-accordion-btn-focus-box-shadow)}.accordion-header{margin-bottom:0}.accordion-item{color:var(--bs-accordion-color);background-color:var(--bs-accordion-bg);border:var(--bs-accordion-border-width) solid var(--bs-accordion-border-color)}.accordion-item:first-of-type{border-top-left-radius:var(--bs-accordion-border-radius);border-top-right-radius:var(--bs-accordion-border-radius)}.accordion-item:first-of-type .accordion-button{border-top-left-radius:var(--bs-accordion-inner-border-radius);border-top-right-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:not(:first-of-type){border-top:0}.accordion-item:last-of-type{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-item:last-of-type .accordion-button.collapsed{border-bottom-right-radius:var(--bs-accordion-inner-border-radius);border-bottom-left-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:last-of-type .accordion-collapse{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-body{padding:var(--bs-accordion-body-padding-y) 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"/")}.breadcrumb-item.active{color:var(--bs-breadcrumb-item-active-color)}.pagination{--bs-pagination-padding-x:0.75rem;--bs-pagination-padding-y:0.375rem;--bs-pagination-font-size:1rem;--bs-pagination-color:var(--bs-link-color);--bs-pagination-bg:#fff;--bs-pagination-border-width:1px;--bs-pagination-border-color:#dee2e6;--bs-pagination-border-radius:0.375rem;--bs-pagination-hover-color:var(--bs-link-hover-color);--bs-pagination-hover-bg:#e9ecef;--bs-pagination-hover-border-color:#dee2e6;--bs-pagination-focus-color:var(--bs-link-hover-color);--bs-pagination-focus-bg:#e9ecef;--bs-pagination-focus-box-shadow:0 0 0 0.25rem rgba(13, 110, 253, 0.25);--bs-pagination-active-color:#fff;--bs-pagination-active-bg:#0d6efd;--bs-pagination-active-border-color:#0d6efd;--bs-pagination-disabled-color:#6c757d;--bs-pagination-disabled-bg:#fff;--bs-pagination-disabled-border-color:#dee2e6;display:flex;padding-left:0;list-style:none}.page-link{position:relative;display:block;padding:var(--bs-pagination-padding-y) var(--bs-pagination-padding-x);font-size:var(--bs-pagination-font-size);color:var(--bs-pagination-color);text-decoration:none;background-color:var(--bs-pagination-bg);border:var(--bs-pagination-border-width) solid var(--bs-pagination-border-color);transition:color .15s ease-in-out,background-color .15s ease-in-out,border-color .15s ease-in-out,box-shadow .15s ease-in-out}@media 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var(--bs-badge-padding-x);font-size:var(--bs-badge-font-size);font-weight:var(--bs-badge-font-weight);line-height:1;color:var(--bs-badge-color);text-align:center;white-space:nowrap;vertical-align:baseline;border-radius:var(--bs-badge-border-radius,0)}.badge:empty{display:none}.btn .badge{position:relative;top:-1px}.alert{--bs-alert-bg:transparent;--bs-alert-padding-x:1rem;--bs-alert-padding-y:1rem;--bs-alert-margin-bottom:1rem;--bs-alert-color:inherit;--bs-alert-border-color:transparent;--bs-alert-border:1px solid var(--bs-alert-border-color);--bs-alert-border-radius:0.375rem;position:relative;padding:var(--bs-alert-padding-y) var(--bs-alert-padding-x);margin-bottom:var(--bs-alert-margin-bottom);color:var(--bs-alert-color);background-color:var(--bs-alert-bg);border:var(--bs-alert-border);border-radius:var(--bs-alert-border-radius,0)}.alert-heading{color:inherit}.alert-link{font-weight:700}.alert-dismissible{padding-right:3rem}.alert-dismissible 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(prefers-reduced-motion:reduce){.progress-bar-animated{-webkit-animation:none;animation:none}}.list-group{--bs-list-group-color:#212529;--bs-list-group-bg:#fff;--bs-list-group-border-color:rgba(0, 0, 0, 0.125);--bs-list-group-border-width:1px;--bs-list-group-border-radius:0.375rem;--bs-list-group-item-padding-x:1rem;--bs-list-group-item-padding-y:0.5rem;--bs-list-group-action-color:#495057;--bs-list-group-action-hover-color:#495057;--bs-list-group-action-hover-bg:#f8f9fa;--bs-list-group-action-active-color:#212529;--bs-list-group-action-active-bg:#e9ecef;--bs-list-group-disabled-color:#6c757d;--bs-list-group-disabled-bg:#fff;--bs-list-group-active-color:#fff;--bs-list-group-active-bg:#0d6efd;--bs-list-group-active-border-color:#0d6efd;display:flex;flex-direction:column;padding-left:0;margin-bottom:0;border-radius:var(--bs-list-group-border-radius)}.list-group-numbered{list-style-type:none;counter-reset:section}.list-group-numbered>.list-group-item::before{content:counters(section, ".") 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