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comparison XSeeker.xml @ 6:adff2b3bc192 draft default tip

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" master branch Updating"
author lain
date Mon, 26 Jun 2023 14:47:59 +0000
parents 98f0178217b0
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5:98f0178217b0 6:adff2b3bc192
1 <tool id="interactive_tool_xseeker" tool_type="interactive" name="xseeker" version="@TOOL_VERSION@+@GALAXY_PREFIX@"> 1 <tool id="interactive_tool_xseeker" tool_type="interactive" name="xseeker" version="@TOOL_VERSION@+@GALAXY_PREFIX@">
2 <description>Visualization and annotation of LC-MSMS data tool</description> 2 <description>Visualization and annotation of LC-MSMS data tool</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.5.0</token> 4 <token name="@TOOL_VERSION@">1.5.1</token>
5 <token name="@GALAXY_PREFIX@">0</token> 5 <token name="@GALAXY_PREFIX@">0</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <container type="docker">quay.io/pfem/xseeker:@TOOL_VERSION@</container> 8 <container type="docker">quay.io/pfem/xseeker:@TOOL_VERSION@</container>
9 </requirements> 9 </requirements>
26 #end for 26 #end for
27 #end if 27 #end if
28 </environment_variable> 28 </environment_variable>
29 <environment_variable name="DOCKER">TRUE</environment_variable> 29 <environment_variable name="DOCKER">TRUE</environment_variable>
30 </environment_variables> 30 </environment_variables>
31 <command><![CDATA[ 31 <command detect_errors="exit_code"><![CDATA[
32 ln -s ${infile} /XSeeker/input/test.sqlite 32 cp ${infile} ${outfile}
33 && ln -s ${outfile} /XSeeker/input/test.sqlite
33 && /entrypoint.sh 34 && /entrypoint.sh
34 ]]> 35 ]]>
35 </command> 36 </command>
36 <inputs> 37 <inputs>
37 <param name="infile" type="data" format="binary" 38 <param name="infile" type="data" format="binary"
38 label="An sqlite file processed by XSeeker Preprocessor" 39 label="An sqlite file processed by XSeeker Preprocessor"
39 /> 40 />
40 </inputs> 41 </inputs>
41 <outputs> 42 <outputs>
42 <data name="outfile" format="txt" /> 43 <data name="outfile" format="sqlite" />
43 </outputs> 44 </outputs>
44 <tests> 45 <tests>
45 </tests> 46 </tests>
46 <help> 47 <help>
47 <![CDATA[ 48 <![CDATA[