Mercurial > repos > lain > xseeker

changeset 6:adff2b3bc192 draft default tip

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" master branch Updating"
author lain
date Mon, 26 Jun 2023 14:47:59 +0000
parents 98f0178217b0
children
files XSeeker.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/XSeeker.xml	Mon Jun 12 14:18:14 2023 +0000
+++ b/XSeeker.xml	Mon Jun 26 14:47:59 2023 +0000
@@ -1,7 +1,7 @@
 <tool id="interactive_tool_xseeker" tool_type="interactive" name="xseeker" version="@TOOL_VERSION@+@GALAXY_PREFIX@">
     <description>Visualization and annotation of LC-MSMS data tool</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.5.0</token>
+        <token name="@TOOL_VERSION@">1.5.1</token>
         <token name="@GALAXY_PREFIX@">0</token>
     </macros>
     <requirements>
@@ -28,8 +28,9 @@
         </environment_variable>
         <environment_variable name="DOCKER">TRUE</environment_variable>
     </environment_variables>
-    <command><![CDATA[
-        ln -s ${infile} /XSeeker/input/test.sqlite
+    <command detect_errors="exit_code"><![CDATA[
+        cp ${infile} ${outfile}
+        && ln -s ${outfile} /XSeeker/input/test.sqlite
         &&  /entrypoint.sh
     ]]>
     </command>
@@ -39,7 +40,7 @@
         />
     </inputs>
     <outputs>
-        <data name="outfile" format="txt" />
+        <data name="outfile" format="sqlite" />
     </outputs>
     <tests>
     </tests>