diff resources/galaxy/GIT/config/galaxy.yml @ 0:15c9fbefeaf1 draft

" master branch Updating"
author lain
date Tue, 01 Feb 2022 14:19:30 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resources/galaxy/GIT/config/galaxy.yml	Tue Feb 01 14:19:30 2022 +0000
@@ -0,0 +1,54 @@
+diff --git a/lib/galaxy/config/sample/galaxy.yml.sample b/lib/galaxy/config/sample/galaxy.yml.sample
+index b0fe163e6d..975acbf855 100644
+--- a/lib/galaxy/config/sample/galaxy.yml.sample
++++ b/lib/galaxy/config/sample/galaxy.yml.sample
+@@ -105,6 +105,30 @@ uwsgi:
+   # to be in the same group as the Galaxy system user
+   umask: 027
+ 
++  http: localhost:8080
++
++  threads: 8
++
++  http-raw-body: True
++
++  offload-threads: 8
++
++  master: true
++
++  module: galaxy.webapps.galaxy.buildapp:uwsgi_app()
++
++  interactivetools_enable: true
++  interactivetools_map: database/interactivetools_map.sqlite
++  python-raw: scripts/interactivetools/key_type_token_mapping.py
++  route-host: ^([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)-([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)\.([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)\.(interactivetool\.localhost:8080)$ goto:interactivetool
++  route-run: goto:endendend
++  route-label: interactivetool
++  route-host: ^([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)-([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)\.([A-Za-z0-9]+(?:-[A-Za-z0-9]+)*)\.(interactivetool\.localhost:8080)$ rpcvar:TARGET_HOST rtt_key_type_token_mapper_cached $1 $3 $2 $4 $0 5
++  route-if-not: empty:${TARGET_HOST} httpdumb:${TARGET_HOST}
++  route: .* break:404 Not Found
++  route-label: endendend
++
++
+ galaxy:
+ 
+   # The directory that will be prepended to relative paths in options
+@@ -2091,3 +2115,18 @@ galaxy:
+   # Path to dynamic tool destinations configuration file.
+   #tool_destinations_config_file: tool_destinations.yml
+ 
++
++  interactivetools_enable: true
++  # outputs_to_working_directory will provide you with a better level of isolation. It is highly recommended to set
++  # this parameter with InteractiveTools.
++  outputs_to_working_directory: true
++  interactivetools_prefix: interactivetool
++  interactivetools_map: database/interactivetools_map.sqlite
++  # If you develop InteractiveTools locally and do not have a full FQDN you can
++  # use an arbritrary one, e.g. 'my-hostname' here, if you set this hostname in your
++  # job_conf.xml as well (see the corresponding comment). If running mac OS X, do not match the
++  # "http://host.docker.internal:8080" used at galaxy_infrastructure_url in the galaxy.yml file, 
++  # and use an arbitrary name here instead.
++  # Please make sure that in the local development case you use https://localhost:8080 to access
++  # your Galaxy. http://my-hostname:8080 will not work.
++  # galaxy_infrastructure_url: http://my-hostname:8080