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comparison Dockerfile @ 0:a174cbbb12dd draft

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" master branch Updating"
author lain
date Tue, 24 Nov 2020 18:55:08 +0000
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-1:000000000000 0:a174cbbb12dd
1
2 FROM python:3.8-buster
3
4 # set author
5 MAINTAINER Lain Pavot <lain.pavot@inra.fr>
6
7 # set encoding
8 ENV LC_ALL en_US.UTF-8
9 ENV LANG en_US.UTF-8
10 ENV R_BASE_VERSION 4.0.3
11
12 ENV PLANEMO_VENV_LOCATION /planemo-venv
13 ENV CONDA /tmp/conda
14
15 RUN \
16 apt-get update \
17 && apt-get install -y --no-install-recommends \
18 ed \
19 less \
20 locales \
21 vim-tiny \
22 wget \
23 ca-certificates \
24 fonts-texgyre \
25 && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
26 && locale-gen en_US.utf8 \
27 && /usr/sbin/update-locale LANG=en_US.UTF-8 \
28 && echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \
29 && echo 'APT::Default-Release "stable";' > /etc/apt/apt.conf.d/default \
30 && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \
31 && apt-get update \
32 && apt-get upgrade -y \
33 && apt-get install -y --no-install-recommends \
34 git \
35 littler \
36 libhdf5-dev \
37 r-cran-littler \
38 r-base \
39 r-base-dev \
40 r-recommended \
41 python-virtualenv \
42 && R -e 'install.packages("batch", repos="http://cran.us.r-project.org")' \
43 && pip install virtualenv \
44 && python -m virtualenv "$PLANEMO_VENV_LOCATION" \
45 && . "$PLANEMO_VENV_LOCATION"/bin/activate \
46 && pip install --upgrade pip setuptools \
47 && pip install planemo numpy \
48 && planemo conda_init --conda_prefix "$CONDA" \
49 && apt-get clean autoclean \
50 && apt-get autoremove --yes \
51 && rm -rf /var/lib/{apt,dpkg,cache,log}/ \
52 && rm -rf /usr/bin/X11 \
53 && rm -rf /tmp/* ;
54
55 CMD []
56