view install/package_r_batch/tool_dependencies.xml @ 8:c2be3b890724 draft

planemo upload commit 00a7f9aadf30a7d728eb4df72ca38ebe5dd7be03
author lecorguille
date Tue, 06 Jun 2017 09:43:23 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.1.2">
        <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>

    <package name="r-batch" version="1.1_4">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="R" version="3.1.2" />
                    </repository>
                    
                    <package>http://application.sb-roscoff.fr/download/w4m/cran-archive/package_r_batch_1_1_4//batch_1.1-4.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
batch: https://cran.r-project.org/web/packages/batch/index.html
batch: Batching Routines in Parallel and Passing Command-Line Arguments to R

Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See ‘parseCommandArgs(...)’ for the main example of how to use this package.

Author: 	Thomas Hoffmann tjhoffm at gmail.com


        </readme>
    </package>
</tool_dependency>