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annotate install/package_r_batch/tool_dependencies.xml @ 8:c2be3b890724 draft

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author lecorguille
date Tue, 06 Jun 2017 09:43:23 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.2">
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4 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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7 <package name="r-batch" version="1.1_4">
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8 <install version="1.0">
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9 <actions>
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10 <action type="setup_r_environment">
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11 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="R" version="3.1.2" />
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13 </repository>
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15 <package>http://application.sb-roscoff.fr/download/w4m/cran-archive/package_r_batch_1_1_4//batch_1.1-4.tar.gz</package>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 batch: https://cran.r-project.org/web/packages/batch/index.html
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21 batch: Batching Routines in Parallel and Passing Command-Line Arguments to R
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23 Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See ‘parseCommandArgs(...)’ for the main example of how to use this package.
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25 Author: Thomas Hoffmann tjhoffm at gmail.com
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28 </readme>
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29 </package>
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30 </tool_dependency>