Mercurial > repos > lecorguille > camera_annotate

annotate README.rst @ 15:6139bfcc95cb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
author lecorguille
date Thu, 01 Mar 2018 08:29:32 -0500
parents 225cb8347572
children a2c49996603e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
1
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
2 Changelog/News
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
3 --------------
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
4
15
6139bfcc95cb planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 14
diff changeset
5 **Version 2.2.2 - 01/03/2018**
6139bfcc95cb planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 14
diff changeset
6
6139bfcc95cb planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 14
diff changeset
7 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
6139bfcc95cb planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 14
diff changeset
8
14
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 13
diff changeset
9 **Version 2.2.1 - 29/11/2017**
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 13
diff changeset
10
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 13
diff changeset
11 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 13
diff changeset
12
13
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
13 **Version 2.2.0 - 03/02/2017**
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
14
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
15 - BUGFIX: the diffreport ids didn't convert the rt in minute as the other export
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
16
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
17 - UPDATE: the settings (digits, convertion in minutes) of the identifiants will no longer modify the native one. Because we want to be conservative and because it can be dangerous for the data integrity during a futur merge of the table, we decide to put those customization in a new column namecustom within the variableMetadata.
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
18
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
19 - IMPROVEMENT: add some sections within the form to separate the different parts of the process
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
20
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
21 - IMPROVEMENT: add the possibility to use defined ruleset
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
22
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
23 - IMPROVEMENT: add the possibility to set the MZ digit within the identifiants
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
24
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
25 - IMPROVEMENT: CAMERA.annotate is now compatible with merged individual data from xcms.xcmsSet
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
26
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
27
9
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
28 **Version 2.1.5 - 21/04/2016**
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
29
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
30 - UPGRADE: upgrate the CAMERA version from 1.22.0 to 1.26.0
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
31
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
32
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
33 **Version 2.1.4 - 18/04/2016**
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
34
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
35 - TEST: refactoring to pass planemo test using conda dependencies
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
36
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 8
diff changeset
37 **Version 2.1.3 - 10/02/2016**
8
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
38
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
39 - BUGFIX: better management of errors. Datasets remained green although the process failed
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
40
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
41 - BUGFIX: the conversion into minutes of the retention time was applied to the diffreport outputs (several conditions)
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
42
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
43 - IMPROVEMENT: when there are several conditions, the tool will generate individual datasets (tsv, pdf) instead of a zip file. The usual png (eic, boxplot) will from now be integrated in two pdf.
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
44
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
45 - UPDATE: refactoring of internal management of inputs/outputs
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
46
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
47
13
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
48 **VERSION 2.1.0 - 09/10/2015**
8
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
49
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
50 - BUGFIX: There was a bug with the CAMERA.annotate (generating a bad dataMatrix (intensities which don't match with the metabolites))
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
51
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
52
13
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 9
diff changeset
53 **VERSION 2.1.0 - 07/06/2015**
8
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
54
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
55 - IMPROVEMENT: new datatype/dataset formats (rdata.camera.positive, rdata.camera.negative, rdata.camera.quick ...) will facilitate the sequence of tools and so avoid incompatibility errors.
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
56
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
57 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
58
8c5bb7b86df9 planemo upload
lecorguille
parents:
diff changeset
59 - UPDATE: merged with annotateDiffreport. Some parameters are dedicated to experiences with several conditions