Mercurial > repos > lecorguille > xcms_group

comparison abims_xcms_group.xml @ 5:0306a96cc446 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:14:27 -0400
parents 2db1d1d0f131
children 5d80e7511dfb
comparison
equal deleted inserted replaced
4:2db1d1d0f131 5:0306a96cc446
96 <data name="rplotsPdf" format="pdf" label="${image.name[:-6]}.group.Rplots.pdf"/> 96 <data name="rplotsPdf" format="pdf" label="${image.name[:-6]}.group.Rplots.pdf"/>
97 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> 97 <data name="log" format="txt" label="xset.log.txt" hidden="true" />
98 </outputs> 98 </outputs>
99 99
100 <tests> 100 <tests>
101 <test> 101 <!--<test>
102 <param name="image" value="xset.RData"/> 102 <param name="image" value="xset.RData"/>
103 <param name="methods|method" value="density"/> 103 <param name="methods|method" value="density"/>
104 <param name="methods|bw" value="5"/> 104 <param name="methods|bw" value="5"/>
105 <param name="methods|minfrac" value="0.3"/> 105 <param name="methods|minfrac" value="0.3"/>
106 <param name="methods|mzwid" value="0.01"/> 106 <param name="methods|mzwid" value="0.01"/>
114 <has_text text="Peaks: 59359 (about 14840 per sample)" /> 114 <has_text text="Peaks: 59359 (about 14840 per sample)" />
115 <has_text text="Peak Groups: 48998" /> 115 <has_text text="Peak Groups: 48998" />
116 <has_text text="Sample classes: bio, blank" /> 116 <has_text text="Sample classes: bio, blank" />
117 </assert_contents> 117 </assert_contents>
118 </output> 118 </output>
119 </test>-->
120 <test>
121 <param name="image" value="faahKO.xset.RData"/>
122 <param name="methods|method" value="density"/>
123 <param name="methods|bw" value="5"/>
124 <param name="methods|minfrac" value="0.3"/>
125 <param name="methods|mzwid" value="0.01"/>
126 <param name="methods|density_options|option" value="show"/>
127 <param name="methods|density_options|max" value="50"/>
128 <output name="log">
129 <assert_contents>
130 <has_text text="object with 4 samples" />
131 <has_text text="Time range: 2506.1-4477.9 seconds (41.8-74.6 minutes)" />
132 <has_text text="Mass range: 200.1-600 m/z" />
133 <has_text text="Peaks: 9251 (about 2313 per sample)" />
134 <has_text text="Peak Groups: 8275" />
135 <has_text text="Sample classes: KO, WT" />
136 </assert_contents>
137 </output>
119 </test> 138 </test>
120 <test> 139 <!--<test>
121 <param name="image" value="xset.group.retcor.RData"/> 140 <param name="image" value="xset.group.retcor.RData"/>
122 <param name="methods|method" value="density"/> 141 <param name="methods|method" value="density"/>
123 <param name="methods|bw" value="5"/> 142 <param name="methods|bw" value="5"/>
124 <param name="methods|minfrac" value="0.3"/> 143 <param name="methods|minfrac" value="0.3"/>
125 <param name="methods|mzwid" value="0.01"/> 144 <param name="methods|mzwid" value="0.01"/>
133 <has_text text="Peaks: 59359 (about 14840 per sample)" /> 152 <has_text text="Peaks: 59359 (about 14840 per sample)" />
134 <has_text text="Peak Groups: 48958" /> 153 <has_text text="Peak Groups: 48958" />
135 <has_text text="Sample classes: bio, blank" /> 154 <has_text text="Sample classes: bio, blank" />
136 </assert_contents> 155 </assert_contents>
137 </output> 156 </output>
157 </test>-->
158 <test>
159 <param name="image" value="faahKO.xset.group.retcor.RData"/>
160 <param name="methods|method" value="density"/>
161 <param name="methods|bw" value="5"/>
162 <param name="methods|minfrac" value="0.3"/>
163 <param name="methods|mzwid" value="0.01"/>
164 <param name="methods|density_options|option" value="show"/>
165 <param name="methods|density_options|max" value="50"/>
166 <output name="log">
167 <assert_contents>
168 <has_text text="object with 4 samples" />
169 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" />
170 <has_text text="Mass range: 200.1-600 m/z" />
171 <has_text text="Peaks: 9251 (about 2313 per sample)" />
172 <has_text text="Peak Groups: 8157" />
173 <has_text text="Sample classes: KO, WT" />
174 </assert_contents>
175 </output>
138 </test> 176 </test>
139 </tests> 177 </tests>
140 178
141 <help><![CDATA[ 179 <help><![CDATA[
142 180