Mercurial > repos > lecorguille > xcms_plot_chromatogram

comparison lib.r @ 12:0cab69429e1e draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 50478425b4773ebcb393c0e31f1e622b7406dcbb"
author workflow4metabolomics
date Thu, 24 Sep 2020 08:08:50 +0000
parents 37d31fd64eb4
children 024974037c4e
comparison
equal deleted inserted replaced
11:37d31fd64eb4 12:0cab69429e1e
254 }else{ 254 }else{
255 group_colors <- hcl.colors(length(unique(xdata$sample_group)), palette="Dark 3") 255 group_colors <- hcl.colors(length(unique(xdata$sample_group)), palette="Dark 3")
256 } 256 }
257 if (length(group_colors) > 1) { 257 if (length(group_colors) > 1) {
258 names(group_colors) <- unique(xdata$sample_group) 258 names(group_colors) <- unique(xdata$sample_group)
259 plot(chrom, col = group_colors[as.factor(chrom$sample_group)], main=main, peakType = "none") 259 plot(chrom, col = group_colors[chrom$sample_group], main=main, peakType = "none")
260 legend("topright", legend=names(group_colors), col=group_colors, cex=0.8, lty=1) 260 legend("topright", legend=names(group_colors), col=group_colors, cex=0.8, lty=1)
261 } 261 }
262 262
263 # Color by sample 263 # Color by sample
264 plot(chrom, col = rainbow(length(xdata@phenoData@data$sample_name)), main=main, peakType = "none") 264 plot(chrom, col = rainbow(length(xdata@phenoData@data$sample_name)), main=main, peakType = "none")