Mercurial > repos > lecorguille > xcms_plot_chromatogram
changeset 12:0cab69429e1e draft
"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 50478425b4773ebcb393c0e31f1e622b7406dcbb"
| author | workflow4metabolomics |
|---|---|
| date | Thu, 24 Sep 2020 08:08:50 +0000 |
| parents | 37d31fd64eb4 |
| children | 024974037c4e |
| files | lib.r repository_dependencies.xml xcms_plot_chromatogram.xml |
| diffstat | 3 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- a/lib.r Tue Jul 21 09:17:54 2020 -0400 +++ b/lib.r Thu Sep 24 08:08:50 2020 +0000 @@ -256,7 +256,7 @@ } if (length(group_colors) > 1) { names(group_colors) <- unique(xdata$sample_group) - plot(chrom, col = group_colors[as.factor(chrom$sample_group)], main=main, peakType = "none") + plot(chrom, col = group_colors[chrom$sample_group], main=main, peakType = "none") legend("topright", legend=names(group_colors), col=group_colors, cex=0.8, lty=1) }
--- a/repository_dependencies.xml Tue Jul 21 09:17:54 2020 -0400 +++ b/repository_dependencies.xml Thu Sep 24 08:08:50 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" ?> <repositories> - <repository changeset_revision="7800ba9a4c1e" name="no_unzip_datatype" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> - <repository changeset_revision="544f6d2329ac" name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> + <repository name="no_unzip_datatype" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7800ba9a4c1e"/> + <repository name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="544f6d2329ac"/> </repositories> \ No newline at end of file
--- a/xcms_plot_chromatogram.xml Tue Jul 21 09:17:54 2020 -0400 +++ b/xcms_plot_chromatogram.xml Thu Sep 24 08:08:50 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@TOOL_VERSION@+galaxy1"> +<tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@TOOL_VERSION@+galaxy2"> <description>Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)</description> <macros> @@ -102,6 +102,10 @@ Changelog/News -------------- +**Galaxy Version 3.6.1+galaxy2 - 23/09/2020** + +- BUGFIX: sample group colours did not match group labels. + .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS @HELP_XCMS_NEWVERSION_3610@