Mercurial > repos > lecorguille > xcms_xcmsset
comparison abims_xcms_xcmsSet.xml @ 28:378ddb410225 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4dc5751176d47d41fa1dec33eb443e335a1a316f
author | workflow4metabolomics |
---|---|
date | Fri, 26 Jul 2019 10:26:24 -0400 |
parents | 3bd53dcfa438 |
children | 793f87231d49 |
comparison
equal
deleted
inserted
replaced
27:3bd53dcfa438 | 28:378ddb410225 |
---|---|
393 | 393 |
394 ----------- | 394 ----------- |
395 Description | 395 Description |
396 ----------- | 396 ----------- |
397 | 397 |
398 This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package. It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated. | 398 This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package. |
399 A tutorial on how to perform xcms preprocessing is available here_. | 399 It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated. |
400 A tutorial on how to perform xcms preprocessing is available as GTN_ (Galaxy Training Network). | |
400 | 401 |
401 .. _xcms: https://bioconductor.org/packages/release/bioc/html/xcms.html | 402 .. _xcms: https://bioconductor.org/packages/release/bioc/html/xcms.html |
402 .. _here: http://web11.sb-roscoff.fr/download/w4m/howto/w4m_HowToPerformXcmsPreprocessing_v02.pdf | 403 .. _GTN: https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms/tutorial.html |
403 | 404 |
404 | 405 |
405 ----------------- | 406 ----------------- |
406 Workflow position | 407 Workflow position |
407 ----------------- | 408 ----------------- |