Mercurial > repos > lecorguille > xcms_xcmsset

diff abims_xcms_xcmsSet.xml @ 28:378ddb410225 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4dc5751176d47d41fa1dec33eb443e335a1a316f
author workflow4metabolomics
date Fri, 26 Jul 2019 10:26:24 -0400
parents 3bd53dcfa438
children 793f87231d49
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--- a/abims_xcms_xcmsSet.xml	Tue Apr 30 04:41:11 2019 -0400
+++ b/abims_xcms_xcmsSet.xml	Fri Jul 26 10:26:24 2019 -0400
@@ -395,11 +395,12 @@
 Description
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-This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package. It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated.
-A tutorial on how to perform xcms preprocessing is available here_.
+This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package.
+It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated.
+A tutorial on how to perform xcms preprocessing is available as GTN_ (Galaxy Training Network).
 
 .. _xcms: https://bioconductor.org/packages/release/bioc/html/xcms.html
-.. _here: http://web11.sb-roscoff.fr/download/w4m/howto/w4m_HowToPerformXcmsPreprocessing_v02.pdf
+.. _GTN: https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms/tutorial.html
 
 
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