Mercurial > repos > lgueguen > sartools
changeset 2:d86ccac2a660 draft
New release of SARTools (1.3.2)
| author | lgueguen |
|---|---|
| date | Wed, 17 May 2017 05:09:10 -0400 |
| parents | fe0ee346b17d |
| children | de6d0b7c17af |
| files | README.md abims_sartools_deseq2.xml abims_sartools_edger.xml macros.xml |
| diffstat | 4 files changed, 12 insertions(+), 9 deletions(-) [+] |
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--- a/README.md Wed Apr 26 05:04:18 2017 -0400 +++ b/README.md Wed May 17 05:09:10 2017 -0400 @@ -1,5 +1,5 @@ ----------------------------------------------------------- -SARTools-Galaxy: a galaxy wrapper for SARTools version 1.2.0 +SARTools-Galaxy: a galaxy wrapper for SARTools version 1.3.2 ----------------------------------------------------------- [](https://travis-ci.org/PF2-pasteur-fr/SARTools-Galaxy) @@ -12,12 +12,12 @@ Requirements: ------------- - R (3.2.2 or higher), Bio-conductor package - SARTools package (1.2.0) - other R packages: DESeq2 (1.10.0 or higher), edgeR (3.12.0 or higher), genefilter, xtable and knitr + R (3.3.0 or higher), Bio-conductor package + SARTools package (1.3.2) + other R packages: DESeq2 (1.12.0 or higher), edgeR (3.12.0 or higher), genefilter, xtable and knitr Rscript - SARTools 1.2.0 can be downloaded on github (https://github.com/PF2-pasteur-fr/SARTools). More information about installation can be found at this url. + SARTools can be downloaded on github (https://github.com/PF2-pasteur-fr/SARTools). More information about installation can be found at this url. Requirements using Conda: -------------------------
--- a/abims_sartools_deseq2.xml Wed Apr 26 05:04:18 2017 -0400 +++ b/abims_sartools_deseq2.xml Wed May 17 05:09:10 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="sartools_deseq2" name="SARTools DESeq2" version="1.0.0"> +<tool id="sartools_deseq2" name="SARTools DESeq2" version="@WRAPPER_VERSION@.0"> <!-- [REQUIRED] Tool description displayed after the tool name --> <description>Compare two or more biological conditions in a RNA-Seq framework with DESeq2</description>
--- a/abims_sartools_edger.xml Wed Apr 26 05:04:18 2017 -0400 +++ b/abims_sartools_edger.xml Wed May 17 05:09:10 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="sartools_edger" name="SARTools edgeR" version="1.0.0"> +<tool id="sartools_edger" name="SARTools edgeR" version="@WRAPPER_VERSION@.0"> <!-- [REQUIRED] Tool description displayed after the tool name --> <description>Compare two or more biological conditions in a RNA-Seq framework with edgeR</description>
--- a/macros.xml Wed Apr 26 05:04:18 2017 -0400 +++ b/macros.xml Wed May 17 05:09:10 2017 -0400 @@ -1,8 +1,11 @@ <macros> + + <token name="@WRAPPER_VERSION@">1.3.2</token> + <xml name="requirements"> <requirements> - <requirement type="package" version="1.2.0">r-sartools</requirement> - <requirement type="package" version="1.3.0">r-optparse</requirement> + <requirement type="package" version="1.3.2">r-sartools</requirement> + <requirement type="package" version="1.3.2">r-optparse</requirement> </requirements> </xml>