Mercurial > repos > lldelisle > revertr2orientationinbam

annotate test-data/input.sam @ 1:21ddefab2e4f draft default tip

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planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit 49a42d0e75d6ae7faa3ce399524157c35546fbaa
author lldelisle
date Thu, 20 Oct 2022 10:51:18 +0000
parents 05aa21d39189
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05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
1 @HD VN:1.4 SO:coordinate
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
2 @SQ SN:chr1 LN:195471971
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
3 1 163 chr1 3151308 255 43M = 3151560 295 GTCCCAAAAAGCAGAGAGAAATATCTCTCTGGGCCTTATAGCA AAAAAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE NH:i:1 HI:i:1 AS:i:82 nM:i:1
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
4 1 83 chr1 3151560 255 43M = 3151308 -295 CTGCTGGAAAAACTGTTCGTTTTAGGAAATAAGGGCGAGTGCG EEEEEEAEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEAAAAA NH:i:1 HI:i:1 AS:i:82 nM:i:1
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
5 2 137 chr1 3155261 255 9S20M * 0 0 TGTGGGTTTTACACACGGGAGGAATCGGG AAAAA/EEE/EE6EAEE6EAE6/EEEAEE NH:i:1 HI:i:1 AS:i:19 nM:i:0
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
6 3 99 chr1 3195817 255 43M = 3195911 137 ATCTTACTCTGTTTCACAGATAGGTGCTGAGGTTAAATTTTGC AAAAAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE NH:i:1 HI:i:1 AS:i:84 nM:i:0
05aa21d39189 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam commit fe9813fe41ba241b47f7b2b4e4c9672ef35c0b35-dirty
lldelisle
parents:
diff changeset
7 3 147 chr1 3195911 255 43M = 3195817 -137 GGTGTAGGTTCTTAGACGCAAGAAATCTCAGGTAGAGTTTGGC EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAAAA NH:i:1 HI:i:1 AS:i:84 nM:i:0