Mercurial > repos > lparsons > ea_utils
comparison tool_dependencies.xml @ 0:e6f1c31279db draft
Initial version with fastq-join
author | Lance Parsons <lparsons@princeton.edu> |
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date | Thu, 20 Sep 2012 18:59:38 -0400 |
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-1:000000000000 | 0:e6f1c31279db |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="ea-utils" version="1.1.2-469"> | |
4 <install version="1.0"> | |
5 <actions> | |
6 <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-469.tar.gz</action> | |
7 <!-- sam-stats and varcall require an extra Bamtools library and we don't need them, so skip --> | |
8 <action type="shell_command">sed -i.bak 's/sam-stats varcall$//' Makefile</action> | |
9 <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> | |
10 <action type="set_environment"> | |
11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
12 </action> | |
13 </actions> | |
14 </install> | |
15 <readme> | |
16 </readme> | |
17 </package> | |
18 </tool_dependency> |