Mercurial > repos > lparsons > ea_utils
diff tool_dependencies.xml @ 0:e6f1c31279db draft
Initial version with fastq-join
author | Lance Parsons <lparsons@princeton.edu> |
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date | Thu, 20 Sep 2012 18:59:38 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Sep 20 18:59:38 2012 -0400 @@ -0,0 +1,18 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ea-utils" version="1.1.2-469"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-469.tar.gz</action> + <!-- sam-stats and varcall require an extra Bamtools library and we don't need them, so skip --> + <action type="shell_command">sed -i.bak 's/sam-stats varcall$//' Makefile</action> + <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> +</tool_dependency>