Mercurial > repos > lparsons > sam_stats
view test-data/testout.txt @ 2:da985dad64c0 draft default tip
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
author | lparsons |
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date | Thu, 16 Jul 2015 17:35:52 -0400 |
parents | b9e7569a4438 |
children |
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reads 100 version 1.38.763 mapped reads 11 pct align 11.000000 mapped bases 377 phred 33 forward 0 reverse 11 len max 48 len mean 34.2727 len stdev 9.4137 mapq mean 255.0000 mapq stdev 0.0000 mapq Q1 255.00 mapq median 255.00 mapq Q3 255.00 snp rate 0.000000 pct mismatch 0.0000 base qual mean 31.5650 base qual stdev 3.2627 %A 27.5862 %C 34.4828 %G 16.7109 %T 21.2202 %PCRPRIMER1 8.753316 %PCRPRIMER1+1 45.358090 %PCRPRIMER1+2 9.814324 %PCRPRIMER2+1 36.074271 num ref seqs 4 num ref aligned 4