annotate PsiCLASS-1.0.2/samtools-0.1.19/misc/md5.c @ 0:903fc43d6227 draft default tip

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author lsong10
date Fri, 26 Mar 2021 16:52:45 +0000
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1 /*
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2 * This code implements the MD5 message-digest algorithm.
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3 * The algorithm is due to Ron Rivest. This code was
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4 * written by Colin Plumb in 1993, no copyright is claimed.
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5 * This code is in the public domain; do with it what you wish.
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6 *
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7 * Equivalent code is available from RSA Data Security, Inc.
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8 * This code has been tested against that, and is equivalent,
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9 * except that you don't need to include two pages of legalese
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10 * with every copy.
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11 *
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12 * To compute the message digest of a chunk of bytes, declare an
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13 * MD5Context structure, pass it to MD5Init, call MD5Update as
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14 * needed on buffers full of bytes, and then call MD5Final, which
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15 * will fill a supplied 16-byte array with the digest.
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16 */
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17
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18 /* Brutally hacked by John Walker back from ANSI C to K&R (no
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19 prototypes) to maintain the tradition that Netfone will compile
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20 with Sun's original "cc". */
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21
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22 #include <string.h>
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23 #include "md5.h"
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24
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25 #ifndef HIGHFIRST
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26 #define byteReverse(buf, len) /* Nothing */
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27 #else
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28 /*
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29 * Note: this code is harmless on little-endian machines.
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30 */
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31 void byteReverse(buf, longs)
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32 unsigned char *buf; unsigned longs;
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33 {
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34 uint32_t t;
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35 do {
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36 t = (uint32_t) ((unsigned) buf[3] << 8 | buf[2]) << 16 |
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37 ((unsigned) buf[1] << 8 | buf[0]);
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38 *(uint32_t *) buf = t;
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39 buf += 4;
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40 } while (--longs);
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41 }
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42 #endif
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43
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44 void MD5Transform(uint32_t buf[4], uint32_t in[16]);
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45
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46
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47 /*
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48 * Start MD5 accumulation. Set bit count to 0 and buffer to mysterious
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49 * initialization constants.
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50 */
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51 void MD5Init(ctx)
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52 struct MD5Context *ctx;
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53 {
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54 ctx->buf[0] = 0x67452301;
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55 ctx->buf[1] = 0xefcdab89;
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56 ctx->buf[2] = 0x98badcfe;
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57 ctx->buf[3] = 0x10325476;
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58
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59 ctx->bits[0] = 0;
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60 ctx->bits[1] = 0;
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61 }
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62
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63 /*
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64 * Update context to reflect the concatenation of another buffer full
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65 * of bytes.
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66 */
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67 void MD5Update(ctx, buf, len)
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68 struct MD5Context *ctx; unsigned char *buf; unsigned len;
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69 {
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70 uint32_t t;
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71
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72 /* Update bitcount */
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73
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74 t = ctx->bits[0];
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75 if ((ctx->bits[0] = t + ((uint32_t) len << 3)) < t)
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76 ctx->bits[1]++; /* Carry from low to high */
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77 ctx->bits[1] += len >> 29;
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78
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79 t = (t >> 3) & 0x3f; /* Bytes already in shsInfo->data */
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80
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81 /* Handle any leading odd-sized chunks */
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82
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83 if (t) {
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84 unsigned char *p = (unsigned char *) ctx->in + t;
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85
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86 t = 64 - t;
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87 if (len < t) {
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88 memcpy(p, buf, len);
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89 return;
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90 }
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91 memcpy(p, buf, t);
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92 byteReverse(ctx->in, 16);
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93 MD5Transform(ctx->buf, (uint32_t *) ctx->in);
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94 buf += t;
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95 len -= t;
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96 }
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97 /* Process data in 64-byte chunks */
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98
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99 while (len >= 64) {
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100 memcpy(ctx->in, buf, 64);
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101 byteReverse(ctx->in, 16);
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102 MD5Transform(ctx->buf, (uint32_t *) ctx->in);
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103 buf += 64;
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104 len -= 64;
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105 }
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106
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107 /* Handle any remaining bytes of data. */
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108
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109 memcpy(ctx->in, buf, len);
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110 }
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111
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112 /*
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113 * Final wrapup - pad to 64-byte boundary with the bit pattern
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114 * 1 0* (64-bit count of bits processed, MSB-first)
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115 */
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116 void MD5Final(digest, ctx)
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117 unsigned char digest[16]; struct MD5Context *ctx;
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118 {
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119 unsigned count;
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120 unsigned char *p;
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121
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122 /* Compute number of bytes mod 64 */
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123 count = (ctx->bits[0] >> 3) & 0x3F;
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124
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125 /* Set the first char of padding to 0x80. This is safe since there is
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126 always at least one byte free */
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127 p = ctx->in + count;
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128 *p++ = 0x80;
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129
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130 /* Bytes of padding needed to make 64 bytes */
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131 count = 64 - 1 - count;
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132
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133 /* Pad out to 56 mod 64 */
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134 if (count < 8) {
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135 /* Two lots of padding: Pad the first block to 64 bytes */
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136 memset(p, 0, count);
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137 byteReverse(ctx->in, 16);
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138 MD5Transform(ctx->buf, (uint32_t *) ctx->in);
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139
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140 /* Now fill the next block with 56 bytes */
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141 memset(ctx->in, 0, 56);
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142 } else {
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143 /* Pad block to 56 bytes */
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144 memset(p, 0, count - 8);
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145 }
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146 byteReverse(ctx->in, 14);
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147
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148 /* Append length in bits and transform */
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149 ((uint32_t *) ctx->in)[14] = ctx->bits[0];
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150 ((uint32_t *) ctx->in)[15] = ctx->bits[1];
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151
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152 MD5Transform(ctx->buf, (uint32_t *) ctx->in);
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153 byteReverse((unsigned char *) ctx->buf, 4);
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154 memcpy(digest, ctx->buf, 16);
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155 memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
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156 }
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157
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158
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159 /* The four core functions - F1 is optimized somewhat */
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160
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161 /* #define F1(x, y, z) (x & y | ~x & z) */
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162 #define F1(x, y, z) (z ^ (x & (y ^ z)))
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163 #define F2(x, y, z) F1(z, x, y)
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164 #define F3(x, y, z) (x ^ y ^ z)
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165 #define F4(x, y, z) (y ^ (x | ~z))
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166
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167 /* This is the central step in the MD5 algorithm. */
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168 #define MD5STEP(f, w, x, y, z, data, s) \
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169 ( w += f(x, y, z) + data, w = w<<s | w>>(32-s), w += x )
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170
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171 /*
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172 * The core of the MD5 algorithm, this alters an existing MD5 hash to
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173 * reflect the addition of 16 longwords of new data. MD5Update blocks
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174 * the data and converts bytes into longwords for this routine.
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175 */
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176 void MD5Transform(buf, in)
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177 uint32_t buf[4]; uint32_t in[16];
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178 {
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179 register uint32_t a, b, c, d;
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180
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181 a = buf[0];
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182 b = buf[1];
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183 c = buf[2];
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184 d = buf[3];
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185
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186 MD5STEP(F1, a, b, c, d, in[0] + 0xd76aa478, 7);
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187 MD5STEP(F1, d, a, b, c, in[1] + 0xe8c7b756, 12);
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188 MD5STEP(F1, c, d, a, b, in[2] + 0x242070db, 17);
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189 MD5STEP(F1, b, c, d, a, in[3] + 0xc1bdceee, 22);
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190 MD5STEP(F1, a, b, c, d, in[4] + 0xf57c0faf, 7);
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191 MD5STEP(F1, d, a, b, c, in[5] + 0x4787c62a, 12);
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192 MD5STEP(F1, c, d, a, b, in[6] + 0xa8304613, 17);
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193 MD5STEP(F1, b, c, d, a, in[7] + 0xfd469501, 22);
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194 MD5STEP(F1, a, b, c, d, in[8] + 0x698098d8, 7);
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195 MD5STEP(F1, d, a, b, c, in[9] + 0x8b44f7af, 12);
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196 MD5STEP(F1, c, d, a, b, in[10] + 0xffff5bb1, 17);
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197 MD5STEP(F1, b, c, d, a, in[11] + 0x895cd7be, 22);
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198 MD5STEP(F1, a, b, c, d, in[12] + 0x6b901122, 7);
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199 MD5STEP(F1, d, a, b, c, in[13] + 0xfd987193, 12);
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200 MD5STEP(F1, c, d, a, b, in[14] + 0xa679438e, 17);
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201 MD5STEP(F1, b, c, d, a, in[15] + 0x49b40821, 22);
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202
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203 MD5STEP(F2, a, b, c, d, in[1] + 0xf61e2562, 5);
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204 MD5STEP(F2, d, a, b, c, in[6] + 0xc040b340, 9);
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205 MD5STEP(F2, c, d, a, b, in[11] + 0x265e5a51, 14);
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206 MD5STEP(F2, b, c, d, a, in[0] + 0xe9b6c7aa, 20);
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207 MD5STEP(F2, a, b, c, d, in[5] + 0xd62f105d, 5);
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208 MD5STEP(F2, d, a, b, c, in[10] + 0x02441453, 9);
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209 MD5STEP(F2, c, d, a, b, in[15] + 0xd8a1e681, 14);
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210 MD5STEP(F2, b, c, d, a, in[4] + 0xe7d3fbc8, 20);
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parents:
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211 MD5STEP(F2, a, b, c, d, in[9] + 0x21e1cde6, 5);
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parents:
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212 MD5STEP(F2, d, a, b, c, in[14] + 0xc33707d6, 9);
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parents:
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213 MD5STEP(F2, c, d, a, b, in[3] + 0xf4d50d87, 14);
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parents:
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214 MD5STEP(F2, b, c, d, a, in[8] + 0x455a14ed, 20);
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parents:
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215 MD5STEP(F2, a, b, c, d, in[13] + 0xa9e3e905, 5);
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parents:
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216 MD5STEP(F2, d, a, b, c, in[2] + 0xfcefa3f8, 9);
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parents:
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217 MD5STEP(F2, c, d, a, b, in[7] + 0x676f02d9, 14);
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parents:
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218 MD5STEP(F2, b, c, d, a, in[12] + 0x8d2a4c8a, 20);
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parents:
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219
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parents:
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220 MD5STEP(F3, a, b, c, d, in[5] + 0xfffa3942, 4);
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parents:
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221 MD5STEP(F3, d, a, b, c, in[8] + 0x8771f681, 11);
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parents:
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222 MD5STEP(F3, c, d, a, b, in[11] + 0x6d9d6122, 16);
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parents:
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223 MD5STEP(F3, b, c, d, a, in[14] + 0xfde5380c, 23);
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parents:
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224 MD5STEP(F3, a, b, c, d, in[1] + 0xa4beea44, 4);
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parents:
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225 MD5STEP(F3, d, a, b, c, in[4] + 0x4bdecfa9, 11);
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parents:
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226 MD5STEP(F3, c, d, a, b, in[7] + 0xf6bb4b60, 16);
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parents:
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227 MD5STEP(F3, b, c, d, a, in[10] + 0xbebfbc70, 23);
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parents:
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228 MD5STEP(F3, a, b, c, d, in[13] + 0x289b7ec6, 4);
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parents:
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229 MD5STEP(F3, d, a, b, c, in[0] + 0xeaa127fa, 11);
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parents:
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230 MD5STEP(F3, c, d, a, b, in[3] + 0xd4ef3085, 16);
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parents:
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231 MD5STEP(F3, b, c, d, a, in[6] + 0x04881d05, 23);
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parents:
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232 MD5STEP(F3, a, b, c, d, in[9] + 0xd9d4d039, 4);
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parents:
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233 MD5STEP(F3, d, a, b, c, in[12] + 0xe6db99e5, 11);
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parents:
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234 MD5STEP(F3, c, d, a, b, in[15] + 0x1fa27cf8, 16);
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parents:
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235 MD5STEP(F3, b, c, d, a, in[2] + 0xc4ac5665, 23);
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parents:
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236
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parents:
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237 MD5STEP(F4, a, b, c, d, in[0] + 0xf4292244, 6);
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parents:
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238 MD5STEP(F4, d, a, b, c, in[7] + 0x432aff97, 10);
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parents:
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239 MD5STEP(F4, c, d, a, b, in[14] + 0xab9423a7, 15);
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parents:
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240 MD5STEP(F4, b, c, d, a, in[5] + 0xfc93a039, 21);
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parents:
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241 MD5STEP(F4, a, b, c, d, in[12] + 0x655b59c3, 6);
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parents:
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242 MD5STEP(F4, d, a, b, c, in[3] + 0x8f0ccc92, 10);
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parents:
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243 MD5STEP(F4, c, d, a, b, in[10] + 0xffeff47d, 15);
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parents:
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244 MD5STEP(F4, b, c, d, a, in[1] + 0x85845dd1, 21);
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parents:
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245 MD5STEP(F4, a, b, c, d, in[8] + 0x6fa87e4f, 6);
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parents:
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246 MD5STEP(F4, d, a, b, c, in[15] + 0xfe2ce6e0, 10);
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parents:
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247 MD5STEP(F4, c, d, a, b, in[6] + 0xa3014314, 15);
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parents:
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248 MD5STEP(F4, b, c, d, a, in[13] + 0x4e0811a1, 21);
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parents:
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249 MD5STEP(F4, a, b, c, d, in[4] + 0xf7537e82, 6);
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parents:
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250 MD5STEP(F4, d, a, b, c, in[11] + 0xbd3af235, 10);
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lsong10
parents:
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251 MD5STEP(F4, c, d, a, b, in[2] + 0x2ad7d2bb, 15);
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parents:
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252 MD5STEP(F4, b, c, d, a, in[9] + 0xeb86d391, 21);
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parents:
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253
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parents:
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254 buf[0] += a;
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parents:
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255 buf[1] += b;
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parents:
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256 buf[2] += c;
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parents:
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257 buf[3] += d;
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parents:
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258 }
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parents:
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259
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parents:
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260 /* lh3: the following code is added by me */
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261
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262 #ifdef MD5SUM_MAIN
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263 #include <stdio.h>
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264 #include <stdlib.h>
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265 #include <string.h>
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parents:
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266 #define HEX_STR "0123456789abcdef"
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267
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268 static void md5_one(const char *fn)
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269 {
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270 unsigned char buf[4096], digest[16];
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271 MD5_CTX md5;
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272 int l;
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273 FILE *fp;
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274
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275 fp = strcmp(fn, "-")? fopen(fn, "r") : stdin;
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parents:
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276 if (fp == 0) {
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parents:
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277 fprintf(stderr, "md5sum: %s: No such file or directory\n", fn);
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278 exit(1);
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279 }
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280 MD5Init(&md5);
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281 while ((l = fread(buf, 1, 4096, fp)) > 0)
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282 MD5Update(&md5, buf, l);
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283 MD5Final(digest, &md5);
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parents:
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284 if (fp != stdin) fclose(fp);
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285 for (l = 0; l < 16; ++l)
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286 printf("%c%c", HEX_STR[digest[l]>>4&0xf], HEX_STR[digest[l]&0xf]);
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287 printf(" %s\n", fn);
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288 }
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289 int main(int argc, char *argv[])
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parents:
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290 {
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291 int i;
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292 if (argc == 1) md5_one("-");
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parents:
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293 else for (i = 1; i < argc; ++i) md5_one(argv[i]);
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parents:
diff changeset
294 return 0;
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parents:
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295 }
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parents:
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296 #endif