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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Get Data]-->
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4 <tool id="PDBDownload" name="PDBDownload" version="1.1.0">
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5 <description>retrieve pdb-file from pdb.org</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">PDBDownload</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="stdio"/>
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11 <expand macro="requirements"/>
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12 <command>PDBDownload
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13
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14 #if $param_id:
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15 -id "$param_id"
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16 #end if
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17 #if $param_o:
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18 -o $param_o
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19 #end if
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20 #if $param_p:
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21 -p "$param_p"
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22 #end if
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23 </command>
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24 <inputs>
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25 <param name="param_id" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="PDB ID for desired structure" help="(-id) ">
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26 <sanitizer>
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27 <valid initial="string.printable">
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28 <remove value="'"/>
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29 <remove value="""/>
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30 </valid>
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31 </sanitizer>
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32 </param>
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33 <param name="param_p" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="proxy" help="(-p) ">
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34 <sanitizer>
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35 <valid initial="string.printable">
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36 <remove value="'"/>
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37 <remove value="""/>
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38 </valid>
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39 </sanitizer>
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40 </param>
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41 </inputs>
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42 <expand macro="advanced_options"/>
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43 <outputs>
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44 <data name="param_o" format="pdb"/>
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45 </outputs>
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46 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.
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47
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48 </help>
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49 </tool>
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