diff galaxy_stubs/PDBDownload.xml @ 2:605370bc1def draft default tip

Uploaded
author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy_stubs/PDBDownload.xml	Tue Jul 12 12:33:33 2016 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Get Data]-->
+<tool id="PDBDownload" name="PDBDownload" version="1.1.0">
+  <description>retrieve pdb-file from pdb.org</description>
+  <macros>
+    <token name="@EXECUTABLE@">PDBDownload</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>PDBDownload
+
+#if $param_id:
+  -id     "$param_id"
+#end if
+#if $param_o:
+  -o $param_o
+#end if
+#if $param_p:
+  -p     "$param_p"
+#end if
+</command>
+  <inputs>
+    <param name="param_id" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="PDB ID for desired structure" help="(-id) ">
+      <sanitizer>
+        <valid initial="string.printable">
+          <remove value="'"/>
+          <remove value="&quot;"/>
+        </valid>
+      </sanitizer>
+    </param>
+    <param name="param_p" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="proxy" help="(-p) ">
+      <sanitizer>
+        <valid initial="string.printable">
+          <remove value="'"/>
+          <remove value="&quot;"/>
+        </valid>
+      </sanitizer>
+    </param>
+  </inputs>
+  <expand macro="advanced_options"/>
+  <outputs>
+    <data name="param_o" format="pdb"/>
+  </outputs>
+  <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.
+
+</help>
+</tool>