Mercurial > repos > luis > ball
diff galaxy_stubs/PDBDownload.xml @ 2:605370bc1def draft default tip
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author | luis |
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date | Tue, 12 Jul 2016 12:33:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy_stubs/PDBDownload.xml Tue Jul 12 12:33:33 2016 -0400 @@ -0,0 +1,49 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [Get Data]--> +<tool id="PDBDownload" name="PDBDownload" version="1.1.0"> + <description>retrieve pdb-file from pdb.org</description> + <macros> + <token name="@EXECUTABLE@">PDBDownload</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>PDBDownload + +#if $param_id: + -id "$param_id" +#end if +#if $param_o: + -o $param_o +#end if +#if $param_p: + -p "$param_p" +#end if +</command> + <inputs> + <param name="param_id" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="PDB ID for desired structure" help="(-id) "> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <param name="param_p" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="proxy" help="(-p) "> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + </inputs> + <expand macro="advanced_options"/> + <outputs> + <data name="param_o" format="pdb"/> + </outputs> + <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure. + +</help> +</tool>