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comparison galaxy_stubs/PDBDownload.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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1:31013b5cd066 2:605370bc1def
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Get Data]-->
4 <tool id="PDBDownload" name="PDBDownload" version="1.1.0">
5 <description>retrieve pdb-file from pdb.org</description>
6 <macros>
7 <token name="@EXECUTABLE@">PDBDownload</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="stdio"/>
11 <expand macro="requirements"/>
12 <command>PDBDownload
13
14 #if $param_id:
15 -id "$param_id"
16 #end if
17 #if $param_o:
18 -o $param_o
19 #end if
20 #if $param_p:
21 -p "$param_p"
22 #end if
23 </command>
24 <inputs>
25 <param name="param_id" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="PDB ID for desired structure" help="(-id) ">
26 <sanitizer>
27 <valid initial="string.printable">
28 <remove value="'"/>
29 <remove value="&quot;"/>
30 </valid>
31 </sanitizer>
32 </param>
33 <param name="param_p" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="proxy" help="(-p) ">
34 <sanitizer>
35 <valid initial="string.printable">
36 <remove value="'"/>
37 <remove value="&quot;"/>
38 </valid>
39 </sanitizer>
40 </param>
41 </inputs>
42 <expand macro="advanced_options"/>
43 <outputs>
44 <data name="param_o" format="pdb"/>
45 </outputs>
46 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.
47
48 </help>
49 </tool>