Mercurial > repos > lz_hust > gatktools
comparison test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 15:01ff8dd37d4d draft default tip
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| author | lz_hust |
|---|---|
| date | Sat, 01 Jun 2019 07:20:41 -0400 |
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| 14:68426930d59c | 15:01ff8dd37d4d |
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| 1 GenomeAnalysisEngine - Strictness is SILENT | |
| 2 TableRecalibrationWalker - Reading in the data from input csv file... | |
| 3 TableRecalibrationWalker - ...done! | |
| 4 TableRecalibrationWalker - The covariates being used here: | |
| 5 TableRecalibrationWalker - ReadGroupCovariate | |
| 6 TableRecalibrationWalker - QualityScoreCovariate | |
| 7 TableRecalibrationWalker - CycleCovariate | |
| 8 TableRecalibrationWalker - DinucCovariate | |
| 9 TableRecalibrationWalker - HomopolymerCovariate | |
| 10 TableRecalibrationWalker - MinimumNQSCovariate | |
| 11 TableRecalibrationWalker - PositionCovariate | |
| 12 TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation... | |
| 13 TableRecalibrationWalker - ...done! | |
| 14 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] | |
| 15 TraversalEngine - Total runtime | |
| 16 TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%) |