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view test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 15:01ff8dd37d4d draft default tip

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author lz_hust
date Sat, 01 Jun 2019 07:20:41 -0400
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GenomeAnalysisEngine - Strictness is SILENT
TableRecalibrationWalker - Reading in the data from input csv file...
TableRecalibrationWalker - ...done!
TableRecalibrationWalker - The covariates being used here:
TableRecalibrationWalker - 	ReadGroupCovariate
TableRecalibrationWalker - 	QualityScoreCovariate
TableRecalibrationWalker - 	CycleCovariate
TableRecalibrationWalker - 	DinucCovariate
TableRecalibrationWalker - 	HomopolymerCovariate
TableRecalibrationWalker - 	MinimumNQSCovariate
TableRecalibrationWalker - 	PositionCovariate
TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation...
TableRecalibrationWalker - ...done!
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
TraversalEngine - Total runtime
TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)