Mercurial > repos > malbuquerque > delly

diff package/tool_dependencies.xml @ 6:7058d37cf97e draft

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Uploaded
author malbuquerque
date Tue, 20 Jan 2015 16:23:33 -0500
parents f7f19d0255e0
children
line wrap: on
line diff
--- a/package/tool_dependencies.xml	Tue Jan 20 15:09:34 2015 -0500
+++ b/package/tool_dependencies.xml	Tue Jan 20 16:23:33 2015 -0500
@@ -17,9 +17,9 @@
 			<install version="1.0">
 				<actions>
 					<action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action>
-					<action type="download_by_url">https://raw.githubusercontent.com/morinlab/galaxy_tools/master/delly/Makefile?token=AKBWDhpiQthVaz3plMQkg4ACAPGEQK1Wks5Ux-25wA%3D%3D</action>
+					<action type="shell_command">ls $REPOSITORY_INSTALL_DIR</action>
 					<action type="move_directory_files">
-						<source_directory>./Makefile?token*</source_directory>
+						<source_directory>$REPOSITORY_INSTALL_DIR/Makefile</source_directory>
 						<destination_directory>./Makefile</destination_directory>
 					</action>
 					<action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action>