Mercurial > repos > malex > ribopicker
comparison ribopicker.sh @ 0:75ca0166e969 draft
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| author | malex |
|---|---|
| date | Tue, 16 Oct 2012 19:42:32 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:75ca0166e969 |
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| 1 #!/bin/bash | |
| 2 # Ribopicker Galaxy Wrapper | |
| 3 # Version: 1.0 | |
| 4 # Oleksandr Moskalenko <om@hpc.ufl.edu> (2012) | |
| 5 | |
| 6 # set -e | |
| 7 | |
| 8 fail() | |
| 9 { | |
| 10 echo "$@" >&2 | |
| 11 exit 1 | |
| 12 } | |
| 13 | |
| 14 ribopicker_galaxy.pl $@ || fail "Could not run RiboPicker" | |
| 15 sleep 1 | |
| 16 ln -s galaxy_rrna.fa galaxy_rrna.txt | |
| 17 ln -s galaxy_nonrrna.fa galaxy_nonrrna.txt |