diff ribopicker.sh @ 0:75ca0166e969 draft

Uploaded
author malex
date Tue, 16 Oct 2012 19:42:32 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ribopicker.sh	Tue Oct 16 19:42:32 2012 -0400
@@ -0,0 +1,17 @@
+#!/bin/bash
+# Ribopicker Galaxy Wrapper
+# Version: 1.0
+# Oleksandr Moskalenko <om@hpc.ufl.edu> (2012)
+
+# set -e
+
+fail()
+{
+    echo "$@" >&2
+    exit 1
+}
+
+ribopicker_galaxy.pl $@ || fail "Could not run RiboPicker"
+sleep 1
+ln -s galaxy_rrna.fa galaxy_rrna.txt
+ln -s galaxy_nonrrna.fa galaxy_nonrrna.txt