comparison append_gene_name.xml @ 1:f4e563843692 draft default tip

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author mandorodriguez
date Thu, 12 May 2016 21:48:06 -0400
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0:12d69a5e4303 1:f4e563843692
1 <tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0">
2 <description>Appends the Gene name to a gene table with the matching EnsID</description>
3 <command interpreter="python">
4 append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file}
5 </command>
6 <inputs>
7 <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next.">
8 </param>
9
10 <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values.">
11 </param>
12 </inputs>
13 <outputs>
14 <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" />
15 </outputs>
16 <tests>
17 </tests>
18 <help>
19
20
21 .. class:: infomark
22
23 Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID.
24
25
26 ------
27
28 .. class:: infomark
29
30 **Tool Author**
31
32 Mando Rodriguez
33 </help>
34 </tool>
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36