Mercurial > repos > mandorodriguez > endsid_gene_name_append
comparison append_gene_name.xml @ 1:f4e563843692 draft default tip
Uploaded
| author | mandorodriguez |
|---|---|
| date | Thu, 12 May 2016 21:48:06 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 0:12d69a5e4303 | 1:f4e563843692 |
|---|---|
| 1 <tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0"> | |
| 2 <description>Appends the Gene name to a gene table with the matching EnsID</description> | |
| 3 <command interpreter="python"> | |
| 4 append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file} | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next."> | |
| 8 </param> | |
| 9 | |
| 10 <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values."> | |
| 11 </param> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" /> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 </tests> | |
| 18 <help> | |
| 19 | |
| 20 | |
| 21 .. class:: infomark | |
| 22 | |
| 23 Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID. | |
| 24 | |
| 25 | |
| 26 ------ | |
| 27 | |
| 28 .. class:: infomark | |
| 29 | |
| 30 **Tool Author** | |
| 31 | |
| 32 Mando Rodriguez | |
| 33 </help> | |
| 34 </tool> | |
| 35 | |
| 36 |