annotate append_gene_name.xml @ 1:f4e563843692 draft default tip

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author mandorodriguez
date Thu, 12 May 2016 21:48:06 -0400
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1 <tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0">
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2 <description>Appends the Gene name to a gene table with the matching EnsID</description>
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3 <command interpreter="python">
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4 append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file}
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5 </command>
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6 <inputs>
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7 <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next.">
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8 </param>
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9
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10 <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values.">
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11 </param>
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12 </inputs>
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13 <outputs>
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14 <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" />
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15 </outputs>
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16 <tests>
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17 </tests>
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18 <help>
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19
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20
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21 .. class:: infomark
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23 Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID.
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24
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25
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26 ------
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27
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28 .. class:: infomark
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29
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30 **Tool Author**
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31
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32 Mando Rodriguez
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33 </help>
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34 </tool>
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