|
1
|
1 <tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0">
|
|
|
2 <description>Appends the Gene name to a gene table with the matching EnsID</description>
|
|
|
3 <command interpreter="python">
|
|
|
4 append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file}
|
|
|
5 </command>
|
|
|
6 <inputs>
|
|
|
7 <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next.">
|
|
|
8 </param>
|
|
|
9
|
|
|
10 <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values.">
|
|
|
11 </param>
|
|
|
12 </inputs>
|
|
|
13 <outputs>
|
|
|
14 <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" />
|
|
|
15 </outputs>
|
|
|
16 <tests>
|
|
|
17 </tests>
|
|
|
18 <help>
|
|
|
19
|
|
|
20
|
|
|
21 .. class:: infomark
|
|
|
22
|
|
|
23 Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID.
|
|
|
24
|
|
|
25
|
|
|
26 ------
|
|
|
27
|
|
|
28 .. class:: infomark
|
|
|
29
|
|
|
30 **Tool Author**
|
|
|
31
|
|
|
32 Mando Rodriguez
|
|
|
33 </help>
|
|
|
34 </tool>
|
|
|
35
|
|
|
36
|
