Mercurial > repos > mandorodriguez > fastqdump_paired
changeset 5:86e30bb1e54e draft
Uploaded
| author | mandorodriguez |
|---|---|
| date | Thu, 21 Jan 2016 12:20:24 -0500 |
| parents | 6c9eb322892d |
| children | aadca684d7c5 |
| files | fastq_dump_paired.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/fastq_dump_paired.xml Wed Oct 28 17:43:11 2015 -0400 +++ b/fastq_dump_paired.xml Thu Jan 21 12:20:24 2016 -0500 @@ -8,7 +8,7 @@ ## The command is a Cheetah template which allows some Python based syntax. ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces ## ! We only have a simple single command here. -fastq-dump --log-level fatal --split-3 --accession ${accession_number}; +fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never; ls -lh | grep ${accession_number}; mv -v ${accession_number}_1.fastq R1.fastq; mv -v ${accession_number}_2.fastq R2.fastq;