Mercurial > repos > marc-wilkins > samifier
comparison samifier/protein_generator.sh @ 2:66ad014e6975 draft default tip
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author | marc-wilkins |
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date | Tue, 06 Aug 2013 20:43:24 -0400 |
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1:afa0439120d8 | 2:66ad014e6975 |
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1 #!/bin/bash | |
2 | |
3 if (type -p java >> /dev/null); then | |
4 _java=java | |
5 elif [[ -n "$JAVA_HOME" ]] && [[ -x "$JAVA_HOME/bin/java" ]]; then | |
6 _java="$JAVA_HOME/bin/java" | |
7 else | |
8 echo "You must install java before runing this tool" >&2 | |
9 exit 1 | |
10 fi | |
11 | |
12 if [[ "$_java" ]]; then | |
13 version=$("$_java" -version 2>&1 | awk -F '"' '/version/ {print $2}') | |
14 if ! [[ "$version" > "1.6" ]]; then | |
15 echo "Java version should be > 1.6" >&2 | |
16 exit 1 | |
17 fi | |
18 fi | |
19 | |
20 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | |
21 | |
22 jar_path="${DIR}/${1}" | |
23 shift | |
24 | |
25 java -Xmx3072M -jar $jar_path $@ |