Mercurial > repos > marcel > caddsuite_linux_x86_64
annotate CADDSuite/galaxyconfigs/tools/DBImporter.xml @ 0:bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
author | marcel |
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date | Tue, 07 Jun 2011 16:43:30 -0400 |
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children | 867bf9f815a0 |
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Migrated tool version 0.93 from old tool shed archive to new tool shed repository
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1 |
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2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> |
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3 <tool id="dbimporter" name="DBImporter" version="0.93 (ob)"> |
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4 <description>import molecules into data base</description> |
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5 <command interpreter="bash"><![CDATA[../../DBImporter |
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6 #if str( $i ) != '' and str( $i ) != 'None' : |
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7 -i "$i" |
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8 #end if |
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9 #if str( $target ) != '' and str( $target ) != 'None' : |
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10 -target "$target" |
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11 #end if |
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12 #if str( $d ) != '' and str( $d ) != 'None' : |
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13 -d "$d" |
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14 #end if |
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15 #if str( $u ) != '' and str( $u ) != 'None' : |
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16 -u "$u" |
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17 #end if |
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18 #if str( $h ) != '' and str( $h ) != 'None' : |
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19 -h "$h" |
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20 #end if |
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21 #if str( $port ) != '' and str( $port ) != 'None' : |
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22 -port "$port" |
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23 #end if |
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24 #if str( $p ) != '' and str( $p ) != 'None' : |
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25 -p "$p" |
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26 #end if |
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27 #if str( $vn ) != '' and str( $vn ) != 'None' : |
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28 -vn "$vn" |
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29 #end if |
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30 #if str( $vid ) != '' and str( $vid ) != 'None' : |
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31 -vid "$vid" |
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32 #end if |
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33 #if str( $vd ) != '' and str( $vd ) != 'None' : |
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34 -vd "$vd" |
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35 #end if |
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36 #if str( $vu ) != '' and str( $vu ) != 'None' : |
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37 -vu "$vu" |
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38 #end if |
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39 | tail -n 5 |
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40 ]]></command> |
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41 <inputs> |
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42 <param name="i" label="input file" optional="false" type="data" format="mol2/sdf/drf"/> |
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43 <param name="target" label="target/dataset name whose molecules should be exported" optional="true" area="true" type="text" size="1x15"/> |
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44 <param name="d" label="database name" optional="false" area="true" type="text" size="1x15"/> |
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45 <param name="u" label="database username" optional="false" area="true" type="text" size="1x15"/> |
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46 <param name="h" label="database host" optional="false" area="true" type="text" size="1x15"/> |
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47 <param name="port" label="database port" optional="true" type="text" area="true" size="1x5" value="3306"/> |
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48 <param name="p" label="database password" optional="false" area="true" type="text" size="1x15"/> |
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49 <param name="vn" label="name of compound vendor" optional="true" area="true" type="text" size="1x15"/> |
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50 <param name="vid" label="name of vendor's compound-ID tag in sd-file" optional="true" area="true" type="text" size="1x15"/> |
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51 <param name="vd" label="vendor library date or version" optional="true" area="true" type="text" size="1x15"/> |
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52 <param name="vu" label="url from wich vendor library was obtained" optional="true" area="true" type="text" size="1x15"/> |
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53 </inputs> |
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54 <outputs/> |
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55 <help>This tool imports molecules into a database. |
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56 As input we need the file containing the molecules to be imported in sd-, mol2- or drf-format.</help> |
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57 </tool> |