Mercurial > repos > marcel > caddsuite_linux_x86_64
annotate CADDSuite/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 0:bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
author | marcel |
---|---|
date | Tue, 07 Jun 2011 16:43:30 -0400 |
parents | |
children | 867bf9f815a0 |
rev | line source |
---|---|
0
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
1 |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
3 <tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="0.93"> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
4 <description>generate galaxy tool-config files</description> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
5 <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
6 #if str( $i ) != '' and str( $i ) != 'None' : |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
7 -i "$i" |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
8 #end if |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
9 #if str( $o ) != '' and str( $o ) != 'None' : |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
10 -o "$o" |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
11 #end if |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
12 #if str( $ignore ) != '' and str( $ignore ) != 'None' : |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
13 -ignore "$ignore" |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
14 #end if |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
15 #if str( $s ) != '' and str( $s ) != 'None' : |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
16 -s "$s" |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
17 #end if |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
18 | tail -n 5 |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
19 ]]></command> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
20 <inputs> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
21 <param name="i" label="input par-file" optional="false" type="data" format="data"/> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
22 <param name="ignore" label="tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" optional="true" area="true" size="1x5"/> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
23 </inputs> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
24 <outputs> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
25 <data name="o" format="xml"/> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
26 <data name="s" format="data"/> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
27 </outputs> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
28 <help>This tool can be used to create galaxy tool-configuration files. |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
29 As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help> |
bac3c274238f
Migrated tool version 0.93 from old tool shed archive to new tool shed repository
marcel
parents:
diff
changeset
|
30 </tool> |