Mercurial > repos > marcel > caddsuite_linux_x86_64
comparison CADDSuite/galaxyconfigs/tools/upload.xml @ 3:ff6df146c0d5
Uploaded
| author | marcel |
|---|---|
| date | Sun, 26 Jun 2011 13:53:57 -0400 |
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| 2:bbc4a2c1d276 | 3:ff6df146c0d5 |
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| 1 <?xml version="1.0"?> | |
| 2 | |
| 3 <tool name="Upload File" id="cadds_upload" version="1.1.2"> | |
| 4 <description> | |
| 5 from your computer | |
| 6 </description> | |
| 7 <action module="galaxy.tools.actions.upload" class="UploadToolAction"/> | |
| 8 <command interpreter="python"> | |
| 9 ../../../data_source/upload.py $GALAXY_ROOT_DIR $GALAXY_DATATYPES_CONF_FILE $paramfile | |
| 10 #set $outnum = 0 | |
| 11 #while $varExists('output%i' % $outnum): | |
| 12 #set $output = $getVar('output%i' % $outnum) | |
| 13 #set $outnum += 1 | |
| 14 ${output.dataset.dataset.id}:${output.files_path}:${output} | |
| 15 #end while | |
| 16 </command> | |
| 17 <inputs nginx_upload="true"> | |
| 18 <param name="file_type" type="select" label="File Format" help="Which format? See help below"> | |
| 19 <options from_parameter="tool.app.datatypes_registry.upload_file_formats" transform_lines="[ "%s%s%s" % ( line, self.separator, line ) for line in obj ]"> | |
| 20 <column name="value" index="1"/> | |
| 21 <column name="name" index="0"/> | |
| 22 <filter type="sort_by" column="0"/> | |
| 23 <filter type="add_value" name="Auto-detect" value="auto" index="0"/> | |
| 24 </options> | |
| 25 </param> | |
| 26 <param name="async_datasets" type="hidden" value="None"/> | |
| 27 <upload_dataset name="files" title="Specify Files for Dataset" file_type_name="file_type" metadata_ref="files_metadata"> | |
| 28 <param name="file_data" type="file" size="30" label="File" ajax-upload="true" help="TIP: For NGS and other large files (>~2GB), uploading via HTTP/FTP URL (below) is the most reliable method."> | |
| 29 <validator type="expression" message="You will need to reselect the file you specified (%s)." substitute_value_in_message="True">not ( ( isinstance( value, unicode ) or isinstance( value, str ) ) and value != "" )</validator> <!-- use validator to post message to user about needing to reselect the file, since most browsers won't accept the value attribute for file inputs --> | |
| 30 </param> | |
| 31 <param name="url_paste" type="text" area="true" size="5x35" label="URL/Text" help="Here you may specify a list of URLs (one per line) or paste the contents of a file."/> | |
| 32 <param name="ftp_files" type="ftpfile" label="Files uploaded via FTP"/> | |
| 33 <!-- | |
| 34 <param name="space_to_tab" type="select" display="checkboxes" multiple="True" label="Convert spaces to tabs" help="Use this option if you are entering intervals by hand."> | |
| 35 <option value="Yes">Yes</option> | |
| 36 </param> | |
| 37 --> | |
| 38 </upload_dataset> | |
| 39 <!--<param name="dbkey" type="genomebuild" label="Genome" />--> | |
| 40 <conditional name="files_metadata" title="Specify metadata" value_from="self:app.datatypes_registry.get_upload_metadata_params" value_ref="file_type" value_ref_in_group="False" /> | |
| 41 <!-- <param name="other_dbkey" type="text" label="Or user-defined Genome" /> --> | |
| 42 </inputs> | |
| 43 <help> | |
| 44 | |
| 45 </help> | |
| 46 </tool> |