Mercurial > repos > marcel > caddsuite_linux_x86_64
diff CADDSuite/galaxyconfigs/tools/upload.xml @ 3:ff6df146c0d5
Uploaded
author | marcel |
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date | Sun, 26 Jun 2011 13:53:57 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite/galaxyconfigs/tools/upload.xml Sun Jun 26 13:53:57 2011 -0400 @@ -0,0 +1,46 @@ +<?xml version="1.0"?> + +<tool name="Upload File" id="cadds_upload" version="1.1.2"> + <description> + from your computer + </description> + <action module="galaxy.tools.actions.upload" class="UploadToolAction"/> + <command interpreter="python"> + ../../../data_source/upload.py $GALAXY_ROOT_DIR $GALAXY_DATATYPES_CONF_FILE $paramfile + #set $outnum = 0 + #while $varExists('output%i' % $outnum): + #set $output = $getVar('output%i' % $outnum) + #set $outnum += 1 + ${output.dataset.dataset.id}:${output.files_path}:${output} + #end while + </command> + <inputs nginx_upload="true"> + <param name="file_type" type="select" label="File Format" help="Which format? See help below"> + <options from_parameter="tool.app.datatypes_registry.upload_file_formats" transform_lines="[ "%s%s%s" % ( line, self.separator, line ) for line in obj ]"> + <column name="value" index="1"/> + <column name="name" index="0"/> + <filter type="sort_by" column="0"/> + <filter type="add_value" name="Auto-detect" value="auto" index="0"/> + </options> + </param> + <param name="async_datasets" type="hidden" value="None"/> + <upload_dataset name="files" title="Specify Files for Dataset" file_type_name="file_type" metadata_ref="files_metadata"> + <param name="file_data" type="file" size="30" label="File" ajax-upload="true" help="TIP: For NGS and other large files (>~2GB), uploading via HTTP/FTP URL (below) is the most reliable method."> + <validator type="expression" message="You will need to reselect the file you specified (%s)." substitute_value_in_message="True">not ( ( isinstance( value, unicode ) or isinstance( value, str ) ) and value != "" )</validator> <!-- use validator to post message to user about needing to reselect the file, since most browsers won't accept the value attribute for file inputs --> + </param> + <param name="url_paste" type="text" area="true" size="5x35" label="URL/Text" help="Here you may specify a list of URLs (one per line) or paste the contents of a file."/> + <param name="ftp_files" type="ftpfile" label="Files uploaded via FTP"/> + <!-- + <param name="space_to_tab" type="select" display="checkboxes" multiple="True" label="Convert spaces to tabs" help="Use this option if you are entering intervals by hand."> + <option value="Yes">Yes</option> + </param> + --> + </upload_dataset> + <!--<param name="dbkey" type="genomebuild" label="Genome" />--> + <conditional name="files_metadata" title="Specify metadata" value_from="self:app.datatypes_registry.get_upload_metadata_params" value_ref="file_type" value_ref_in_group="False" /> + <!-- <param name="other_dbkey" type="text" label="Or user-defined Genome" /> --> + </inputs> + <help> + + </help> +</tool>