Mercurial > repos > marcel > caddsuite_mac10_6
comparison CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml @ 7:bfab27640f5e draft
CADDSuite version 1.5
| author | Marcel Schumann <schumann.marcel@gmail.com> |
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| date | Tue, 24 Jul 2012 11:13:59 -0400 |
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| 6:decca54699e3 | 7:bfab27640f5e |
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| 1 | |
| 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> | |
| 3 <tool id="pdbdownload" name="PDBDownload" version="1.5"> | |
| 4 <description>retrieve pdb-file from pdb.org</description> | |
| 5 <command interpreter="bash"><![CDATA[../../PDBDownload | |
| 6 #if str( $id ) != '' and str( $id ) != 'None' : | |
| 7 -id "$id" | |
| 8 #end if | |
| 9 #if str( $o ) != '' and str( $o ) != 'None' : | |
| 10 -o "$o" | |
| 11 #end if | |
| 12 #if str( $p ) != '' and str( $p ) != 'None' : | |
| 13 -p "$p" | |
| 14 #end if | |
| 15 | tail -n 5 | |
| 16 ]]></command> | |
| 17 <inputs> | |
| 18 <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/> | |
| 19 <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data name="o" format="pdb"/> | |
| 23 </outputs> | |
| 24 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help> | |
| 25 </tool> |