Mercurial > repos > marcel > caddsuite_mac10_6
diff CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml @ 7:bfab27640f5e draft
CADDSuite version 1.5
author | Marcel Schumann <schumann.marcel@gmail.com> |
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date | Tue, 24 Jul 2012 11:13:59 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml Tue Jul 24 11:13:59 2012 -0400 @@ -0,0 +1,25 @@ + +<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> +<tool id="pdbdownload" name="PDBDownload" version="1.5"> + <description>retrieve pdb-file from pdb.org</description> + <command interpreter="bash"><![CDATA[../../PDBDownload +#if str( $id ) != '' and str( $id ) != 'None' : + -id "$id" +#end if +#if str( $o ) != '' and str( $o ) != 'None' : + -o "$o" +#end if +#if str( $p ) != '' and str( $p ) != 'None' : + -p "$p" +#end if + | tail -n 5 +]]></command> + <inputs> + <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/> + <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/> + </inputs> + <outputs> + <data name="o" format="pdb"/> + </outputs> + <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help> +</tool> \ No newline at end of file