Mercurial > repos > marcel > caddsuite_mac10_6
diff CADDSuite-1.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 6:decca54699e3
Uploaded Version 1.1
author | marcel |
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date | Thu, 12 Jan 2012 11:07:03 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite-1.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml Thu Jan 12 11:07:03 2012 -0500 @@ -0,0 +1,30 @@ + +<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> +<tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.1"> + <description>generate galaxy tool-config files</description> + <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator +#if str( $i ) != '' and str( $i ) != 'None' : + -i "$i" +#end if +#if str( $o ) != '' and str( $o ) != 'None' : + -o "$o" +#end if +#if str( $ignore ) != '' and str( $ignore ) != 'None' : + -ignore "$ignore" +#end if +#if str( $s ) != '' and str( $s ) != 'None' : + -s "$s" +#end if + | tail -n 5 +]]></command> + <inputs> + <param name="i" optional="false" label="input par-file" type="data" format="data"/> + <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" type="text" size="1x15"/> + </inputs> + <outputs> + <data name="o" format="xml"/> + <data name="s" format="data"/> + </outputs> + <help>This tool can be used to create galaxy tool-configuration files. +As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help> +</tool> \ No newline at end of file