Mercurial > repos > marie-tremblay-metatoul > 2dnmrannotation

comparison test-data/2DNMR_Annotation_log.txt @ 2:dff7bde22102 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics commit b3abcb650e9b38458aa0ac5f7d838811d982ff65"
author workflow4metabolomics
date Tue, 04 Feb 2020 10:59:26 -0500
parents
children
comparison
equal deleted inserted replaced
1:a4d2b1926e13 2:dff7bde22102
1 PACKAGE INFO
2 R version 3.4.3 (2017-11-30)
3 Platform: x86_64-pc-linux-gnu (64-bit)
4 Running under: Ubuntu 14.04.5 LTS
5
6 Matrix products: default
7 BLAS: /usr/lib/libblas/libblas.so.3.0
8 LAPACK: /usr/lib/lapack/liblapack.so.3.0
9
10 locale:
11 [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
12 [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
13 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
14 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
15 [9] LC_ADDRESS=C LC_TELEPHONE=C
16 [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
17
18 attached base packages:
19 [1] stats graphics grDevices utils datasets base
20
21 other attached packages:
22 [1] tidyr_0.7.2 stringr_1.2.0 openxlsx_4.1.3 ggplot2_2.2.1 dplyr_0.7.4
23 [6] batch_1.1-4
24
25 loaded via a namespace (and not attached):
26 [1] Rcpp_0.12.14 bindr_0.1 magrittr_1.5 munsell_0.4.3
27 [5] colorspace_1.3-2 R6_2.2.2 rlang_0.4.2 plyr_1.8.4
28 [9] tools_3.4.3 grid_3.4.3 gtable_0.2.0 cli_1.1.0
29 [13] lazyeval_0.2.1 assertthat_0.2.0 tibble_1.3.4 crayon_1.3.4
30 [17] bindrcpp_0.2 zip_1.0.0 purrr_0.3.3 glue_1.2.0
31 [21] stringi_1.1.6 compiler_3.4.3 methods_3.4.3 scales_0.5.0
32 [25] pkgconfig_2.0.1
33 $xlsfile
34 [1] "/home/vagrant/galaxy/database/datasets/001/dataset_1825.dat"
35
36 $cosy_2dsequences
37 [1] "no"
38
39 $jres_2dsequences
40 [1] "yes"
41
42 $hmbc_2dsequences
43 [1] "no"
44
45 $hsqc_2dsequences
46 [1] "yes"
47
48 $tocsy_2dsequences
49 [1] "no"
50
51 $inHouse_DB_choices.choice
52 [1] "no"
53
54 $tolppm1
55 [1] 0.01
56
57 $tolppm2
58 [1] 0.5
59
60 $tolppmJRES
61 [1] 0.002
62
63 $threshold
64 [1] 0.3
65
66 $unicity
67 [1] "no"
68
69 $logOut
70 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2767.dat"
71
72 $annotationCOSY
73 [1] "None"
74
75 $ppmCommunCOSY
76 [1] "None"
77
78 $annotationJRES
79 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2768.dat"
80
81 $ppmCommunJRES
82 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2769.dat"
83
84 $annotationHMBC
85 [1] "None"
86
87 $ppmCommunHMBC
88 [1] "None"
89
90 $annotationHSQC
91 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2770.dat"
92
93 $ppmCommunHSQC
94 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2771.dat"
95
96 $annotationTOCSY
97 [1] "None"
98
99 $ppmCommunTOCSY
100 [1] "None"
101
102 $annotationCombination
103 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2772.dat"
104
105 $AnnotationGraph
106 [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2773.dat"
107
108 null device
109 1
110 Time difference of 1.566586 mins
111
112 End of '2D NMR annotation' Galaxy module call: 2019-12-23 10:55:29