Mercurial > repos > matt-shirley > ncbi_sra_toolkit
comparison sra_pileup.xml @ 28:fdc981664a43
Update to most recent GitHub version passing tests.
author | Matt Shirley <mdshw5@gmail.com> |
---|---|
date | Wed, 01 Apr 2015 12:35:38 -0400 |
parents | 393a04ec0fa9 |
children |
comparison
equal
deleted
inserted
replaced
27:8be4f23d1018 | 28:fdc981664a43 |
---|---|
40 <data format="pileup" name="output"/> | 40 <data format="pileup" name="output"/> |
41 </outputs> | 41 </outputs> |
42 <requirements> | 42 <requirements> |
43 <requirement type="package" version="2.4.5">sra_toolkit</requirement> | 43 <requirement type="package" version="2.4.5">sra_toolkit</requirement> |
44 </requirements> | 44 </requirements> |
45 <tests> | |
46 <test> | |
47 <param name="input_select" value="accession_number"/> | |
48 <param name="accession" value="SRR925743"/> | |
49 <param name="region" value="17:41243452-41277500"/> | |
50 <output name="output" file="sra_pileup_result.pileup" ftype="pileup" /> | |
51 </test> | |
52 </tests> | |
45 <help> | 53 <help> |
46 This tool produces pileup format from sra archives using sra-pileup. | 54 This tool extracts reads from sra archives using sam-dump. |
47 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. | 55 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. |
48 The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. | 56 The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools |
49 Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. | 57 Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy. |
50 </help> | 58 </help> |
51 </tool> | 59 </tool> |