Mercurial > repos > matt-shirley > ncbi_sra_toolkit

changeset 20:281f34ece271

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author Matt Shirley <mdshw5@gmail.com>
date Mon, 30 Mar 2015 20:59:06 -0400
parents 6d25dfb4dbb4
children 847db227d9ce
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Mar 30 20:44:18 2015 -0400
+++ b/tool_dependencies.xml	Mon Mar 30 20:59:06 2015 -0400
@@ -17,6 +17,7 @@
         <action type="change_directory">../ngs/ngs-sdk</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action>
         <action type="change_directory">../../sra-tools</action>
+        <action type="shell_command">echo $PWD</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action>
         <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/ncbi/default.kfg</action>
         <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>