Mercurial > repos > matt-shirley > sam_dump

changeset 1:d1dc85d3e490 draft

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Edited description and requirements.
author Matthew Shirley <mdshw5@gmail.com>
date Tue, 13 Nov 2012 16:31:44 -0500
parents c2995e659548
children 39dab3a4578b
files sam_dump.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/sam_dump.xml	Tue Nov 13 14:36:38 2012 -0500
+++ b/sam_dump.xml	Tue Nov 13 16:31:44 2012 -0500
@@ -1,5 +1,5 @@
-<tool id="sam_dump" name="Extract SAM from SRA" version="1.0.0">
-  <description>Extract SAM format reads from SRA data archive.</description>
+<tool id="sam_dump" name="Extract SAM" version="1.0.0">
+  <description> format reads from NCBI SRA.</description>
   <command>sam-dump $header $aligned $primary $input > $output</command>
   <version_string>sam-dump --version</version_string>
   <inputs>
@@ -23,6 +23,9 @@
   <outputs>
     <data format="sam" name="output"/>
   </outputs>
+  <requirements>
+    <requirement type="binary">sam-dump</requirement>
+  </requirements>
   <help>
     This tool extracts SAM format reads from SRA archives using sam-dump. The sam-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
 Contact Matt Shirley at mdshw5@gmail.com for support and bug reports.