Mercurial > repos > matt-shirley > sra_tools
comparison sra_fetch.xml @ 0:cdcc400dcafc draft
Migrated separate tools fastq_dump, sam_dump, and sra_fetch to this repository for further development.
| author | matt-shirley <mdshw5@gmail.com> |
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| date | Tue, 27 Nov 2012 13:31:09 -0500 |
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| -1:000000000000 | 0:cdcc400dcafc |
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| 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> | |
| 2 <description> by accession from NCBI SRA.</description> | |
| 3 <command interpreter="python">sra_fetch.py '$accession' '$output'</command> | |
| 4 <inputs> | |
| 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="sra" name="output" label="Fetch ${accession.value}"/> | |
| 9 </outputs> | |
| 10 <requirements> | |
| 11 <requirement type="python">sra_fetch.py</requirement> | |
| 12 </requirements> | |
| 13 <help> | |
| 14 This tool fetches SRA archives from NCBI over FTP using the python ftplib. | |
| 15 </help> | |
| 16 </tool> |