Mercurial > repos > matt-shirley > sra_tools

diff sra_fetch.xml @ 0:cdcc400dcafc draft

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Migrated separate tools fastq_dump, sam_dump, and sra_fetch to this repository for further development.
author matt-shirley <mdshw5@gmail.com>
date Tue, 27 Nov 2012 13:31:09 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sra_fetch.xml	Tue Nov 27 13:31:09 2012 -0500
@@ -0,0 +1,16 @@
+<tool id="sra_fetch" name="Fetch SRA" version="1.0.0">
+  <description> by accession from NCBI SRA.</description>
+  <command interpreter="python">sra_fetch.py '$accession' '$output'</command>
+  <inputs>
+    <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
+  </inputs>
+  <outputs>
+    <data format="sra" name="output" label="Fetch ${accession.value}"/>
+  </outputs>
+  <requirements>
+    <requirement type="python">sra_fetch.py</requirement>
+  </requirements>
+  <help>
+    This tool fetches SRA archives from NCBI over FTP using the python ftplib.
+  </help>
+</tool>