Mercurial > repos > matt-shirley > sra_tools
diff sra_fetch.xml @ 0:cdcc400dcafc draft
Migrated separate tools fastq_dump, sam_dump, and sra_fetch to this repository for further development.
author | matt-shirley <mdshw5@gmail.com> |
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date | Tue, 27 Nov 2012 13:31:09 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sra_fetch.xml Tue Nov 27 13:31:09 2012 -0500 @@ -0,0 +1,16 @@ +<tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> + <description> by accession from NCBI SRA.</description> + <command interpreter="python">sra_fetch.py '$accession' '$output'</command> + <inputs> + <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> + </inputs> + <outputs> + <data format="sra" name="output" label="Fetch ${accession.value}"/> + </outputs> + <requirements> + <requirement type="python">sra_fetch.py</requirement> + </requirements> + <help> + This tool fetches SRA archives from NCBI over FTP using the python ftplib. + </help> +</tool>