Mercurial > repos > mb2013 > nepenthes_3dpca
diff ReConstructor.xml @ 12:f69fc89bb392 draft
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author | mb2013 |
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date | Tue, 20 May 2014 03:27:42 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ReConstructor.xml Tue May 20 03:27:42 2014 -0400 @@ -0,0 +1,50 @@ +<tool id="ReConstructor" name="ReConstructor"> + <description>Reconstruct 3D object</description> + <command interpreter="python"> + ReConstructor.py $input $output1 $side $box_x $box_y $box_z $std_factor $colour $x_1 $x_2 +$y_1 $y_2 $z_1 $z_2 $output2 $output3 + </command> + <inputs> + <param name="input" type="data" label="Rotated .ply file" /> + <param name="side" type="select" label="left side is correct"> + <option value="0" selected="true">Yes</option> + <option value="1" >No</option> + </param> + <param name="box_x" size = "2" type = "integer" value = "3" label="sections x" /> + <param name="box_y" size = "2" type = "integer" value = "5" label="sections y" /> + <param name="box_z" size = "2" type = "integer" value = "4" label="sections z" /> + <param name="std_factor" size = "2" type = "integer" value = "1" label="standard deviation factor" /> + <param name="x_1" size = "8" type = "text" value = "standard" label="minimum x" /> + <param name="x_2" size = "8" type = "text" value = "standard" label="maximum x" /> + <param name="y_1" size = "8" type = "text" value = "standard" label="minimum y" /> + <param name="y_2" size = "8" type = "text" value = "standard" label="maximum y" /> + <param name="z_1" size = "8" type = "text" value = "standard" label="minimum z" /> + <param name="z_2" size = "8" type = "text" value = "standard" label="maximum z" /> + <param name="colour" type="select" label="colour of new surface"> + <option value="0" selected="true">Pink</option> + <option value="1" >Light Blue</option> + <option value="2" >Green</option> + <option value="3" >Red</option> + </param> + </inputs> + +<outputs> + <data name="output1" type = "data" format = "ply" label="Reconstruct ${on_string}" /> + <data name="output2" type = "data" format = "txt" label="log ${on_string}" /> + <data name="output3" type = "data" format = "txt" label="histogram log ${on_string}" /> + </outputs> + <help> + **Function** + + Reconstruct object based on symmetry + + + **Input file** + + rotated .ply file with colorcode + + + + + </help> +</tool>