<tool id="ReConstructor" name="ReConstructor">
  <description>Reconstruct 3D object</description>
  <command interpreter="python"> 
    ReConstructor.py $input $output1 $side $box_x $box_y $box_z $std_factor $colour $x_1 $x_2
$y_1 $y_2 $z_1 $z_2 $output2 $output3
  </command>
  <inputs>
    <param name="input" type="data" label="Rotated .ply file" />
    <param name="side" type="select" label="left side is correct">
      <option value="0" selected="true">Yes</option>
      <option value="1" >No</option>
    </param>   
    <param name="box_x" size = "2" type = "integer" value = "3" label="sections x" />
    <param name="box_y" size = "2" type = "integer" value = "5" label="sections y" />
    <param name="box_z" size = "2" type = "integer" value = "4" label="sections z" />
    <param name="std_factor" size = "2" type = "integer" value = "1" label="standard deviation factor" /> 
    <param name="x_1" size = "8" type = "text" value = "standard" label="minimum x" />
    <param name="x_2" size = "8" type = "text" value = "standard" label="maximum x" />
    <param name="y_1" size = "8" type = "text" value = "standard" label="minimum y" />
    <param name="y_2" size = "8" type = "text" value = "standard" label="maximum y" /> 
    <param name="z_1" size = "8" type = "text" value = "standard" label="minimum z" />
    <param name="z_2" size = "8" type = "text" value = "standard" label="maximum z" />
    <param name="colour" type="select" label="colour of new surface">
      <option value="0" selected="true">Pink</option>
      <option value="1" >Light Blue</option>
      <option value="2" >Green</option>
      <option value="3" >Red</option>
    </param>
  </inputs>
  
<outputs>
    <data  name="output1" type = "data" format = "ply" label="Reconstruct ${on_string}" />
    <data  name="output2" type = "data" format = "txt" label="log ${on_string}" />
    <data  name="output3" type = "data" format = "txt" label="histogram log ${on_string}" />
  </outputs>
  <help>
	**Function**

	Reconstruct object based on symmetry
	

	**Input file**

	rotated .ply file with colorcode




  </help>
</tool>