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comparison rapsodyn/SplitFile10x.xml @ 7:3f7b0788a1c4 draft

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author mcharles
date Tue, 07 Oct 2014 10:34:34 -0400
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6:1776b8ddd87e 7:3f7b0788a1c4
1 <tool id="SplitFile10x" name="SplitFile10x" version="1.00">
2 <description>Split file in 10</description>
3 <command interpreter="perl">
4 SplitFile10x.pl $input_file $line_number $output_file1 $output_file2 $output_file3 $output_file4 $output_file5 $output_file6 $output_file7 $output_file8 $output_file9 $output_file10
5 </command>
6 <inputs>
7 <param name="out_format" type="select" label="Format">
8 <option value="pileup">pileup</option>
9 <option value="fastq">fastq</option>
10 <option value="fastqsanger">fastqsanger</option>
11 <option value="sam">sam</option>
12 <option value="fasta">fasta</option>
13 </param>
14 <param name="input_file" type="data" format="fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
15 <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
16 </inputs>
17 <outputs>
18 <data name="output_file1" format="txt" label="PART1 on ${on_string}">
19 <change_format>
20 <when input="out_format" value="pileup" format="pileup" />
21 <when input="out_format" value="fastq" format="fastq" />
22 <when input="out_format" value="sam" format="sam" />
23 <when input="out_format" value="fasta" format="fasta" />
24 <when input="out_format" value="fastqsanger" format="fastqsanger" />
25 </change_format>
26 </data>
27 <data name="output_file2" format="txt" label="PART2 on ${on_string}">
28 <change_format>
29 <when input="out_format" value="pileup" format="pileup" />
30 <when input="out_format" value="fastq" format="fastq" />
31 <when input="out_format" value="sam" format="sam" />
32 <when input="out_format" value="fasta" format="fasta" />
33 <when input="out_format" value="fastqsanger" format="fastqsanger" />
34 </change_format>
35 </data>
36 <data name="output_file3" format="txt" label="PART3 on ${on_string}">
37 <change_format>
38 <when input="out_format" value="pileup" format="pileup" />
39 <when input="out_format" value="fastq" format="fastq" />
40 <when input="out_format" value="sam" format="sam" />
41 <when input="out_format" value="fasta" format="fasta" />
42 <when input="out_format" value="fastqsanger" format="fastqsanger" />
43 </change_format>
44 </data>
45 <data name="output_file4" format="txt" label="PART4 on ${on_string}">
46 <change_format>
47 <when input="out_format" value="pileup" format="pileup" />
48 <when input="out_format" value="fastq" format="fastq" />
49 <when input="out_format" value="sam" format="sam" />
50 <when input="out_format" value="fasta" format="fasta" />
51 <when input="out_format" value="fastqsanger" format="fastqsanger" />
52 </change_format>
53 </data>
54 <data name="output_file5" format="txt" label="PART5 on ${on_string}">
55 <change_format>
56 <when input="out_format" value="pileup" format="pileup" />
57 <when input="out_format" value="fastq" format="fastq" />
58 <when input="out_format" value="sam" format="sam" />
59 <when input="out_format" value="fasta" format="fasta" />
60 <when input="out_format" value="fastqsanger" format="fastqsanger" />
61 </change_format>
62 </data>
63 <data name="output_file6" format="txt" label="PART6 on ${on_string}">
64 <change_format>
65 <when input="out_format" value="pileup" format="pileup" />
66 <when input="out_format" value="fastq" format="fastq" />
67 <when input="out_format" value="sam" format="sam" />
68 <when input="out_format" value="fasta" format="fasta" />
69 <when input="out_format" value="fastqsanger" format="fastqsanger" />
70 </change_format>
71 </data>
72 <data name="output_file7" format="txt" label="PART7 on ${on_string}">
73 <change_format>
74 <when input="out_format" value="pileup" format="pileup" />
75 <when input="out_format" value="fastq" format="fastq" />
76 <when input="out_format" value="sam" format="sam" />
77 <when input="out_format" value="fasta" format="fasta" />
78 <when input="out_format" value="fastqsanger" format="fastqsanger" />
79 </change_format>
80 </data>
81 <data name="output_file8" format="txt" label="PART8 on ${on_string}">
82 <change_format>
83 <when input="out_format" value="pileup" format="pileup" />
84 <when input="out_format" value="fastq" format="fastq" />
85 <when input="out_format" value="sam" format="sam" />
86 <when input="out_format" value="fasta" format="fasta" />
87 <when input="out_format" value="fastqsanger" format="fastqsanger" />
88 </change_format>
89 </data>
90 <data name="output_file9" format="txt" label="PART9 on ${on_string}">
91 <change_format>
92 <when input="out_format" value="pileup" format="pileup" />
93 <when input="out_format" value="fastq" format="fastq" />
94 <when input="out_format" value="sam" format="sam" />
95 <when input="out_format" value="fasta" format="fasta" />
96 <when input="out_format" value="fastqsanger" format="fastqsanger" />
97 </change_format>
98 </data>
99 <data name="output_file10" format="txt" label="PART10 on ${on_string}">
100 <change_format>
101 <when input="out_format" value="pileup" format="pileup" />
102 <when input="out_format" value="fastq" format="fastq" />
103 <when input="out_format" value="sam" format="sam" />
104 <when input="out_format" value="fasta" format="fasta" />
105 <when input="out_format" value="fastqsanger" format="fastqsanger" />
106 </change_format>
107 </data>
108
109 </outputs>
110
111 <help>
112
113
114
115 </help>
116 </tool>