Mercurial > repos > mcharles > rapsosnp
comparison rapsodyn/MergeFile4x.xml @ 1:7f36bd129321 draft
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| author | mcharles |
|---|---|
| date | Wed, 10 Sep 2014 10:24:01 -0400 |
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| 0:442a7c88b886 | 1:7f36bd129321 |
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| 1 <tool id="MergeFile4x" name="MergeFile4x" version="0.01"> | |
| 2 <description>Merge splitted file</description> | |
| 3 <command interpreter="perl"> | |
| 4 MergeFile4x.pl $input_file1 $input_file2 $input_file3 $input_file4 > $output_file | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="out_format" type="select" label="Format"> | |
| 8 <option value="pileup">pileup</option> | |
| 9 <option value="fastq">fastq</option> | |
| 10 <option value="fastqsanger">fastqsanger</option> | |
| 11 <option value="sam">sam</option> | |
| 12 <option value="fasta">fasta</option> | |
| 13 </param> | |
| 14 <param name="input_file1" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 1st file from your history"/> | |
| 15 <param name="input_file2" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 2nd file from your history"/> | |
| 16 <param name="input_file3" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 3rd file from your history"/> | |
| 17 <param name="input_file4" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 4th file from your history"/> | |
| 18 </inputs> | |
| 19 <outputs> | |
| 20 <data name="output_file" format="txt" label="MERGE on ${on_string}"> | |
| 21 <change_format> | |
| 22 <when input="out_format" value="pileup" format="pileup" /> | |
| 23 <when input="out_format" value="fastq" format="fastq" /> | |
| 24 <when input="out_format" value="fastqsanger" format="fastqsanger" /> | |
| 25 <when input="out_format" value="sam" format="sam" /> | |
| 26 <when input="out_format" value="fasta" format="fasta" /> | |
| 27 </change_format> | |
| 28 </data> | |
| 29 </outputs> | |
| 30 | |
| 31 <help> | |
| 32 | |
| 33 | |
| 34 | |
| 35 </help> | |
| 36 </tool> |