--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/MergeMultiFile.xml	Tue Oct 07 10:34:34 2014 -0400
@@ -0,0 +1,34 @@
+<tool id="MergeMultiFile" name="MergeMultiFile" version="1.00">
+<description>Merge multiple files</description>
+<command interpreter="perl">
+    MergeMultiFile.pl $input_files > $output_file 
+</command>
+<inputs>
+<param name="out_format" type="select" label="Format">
+	<option value="pileup">pileup</option>
+	<option value="fastq">fastq</option>
+	<option value="fastqsanger">fastqsanger</option>
+	<option value="sam">sam</option>
+	<option value="fasta">fasta</option>
+	<option value="txt">txt</option>
+</param>
+<param name="input_files"  type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" multiple="true" label="Select suitable files from your history"/>
+</inputs>
+<outputs>
+<data name="output_file" format="txt" label="MERGE on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+	</change_format>
+</data>
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>